Parental gene: | SRM, ENSG00000116649 |
| Aliases: | SRM, PAPT, SPDSY, SPS1, SRML1 |
| Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:11114640..11120081(-) |
>ENSG00000116649
ATGGAGCCCGGCCCCGACGGCCCCGCCGCCTCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCACTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGAGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGGGAGGTGGTGAAGCACCCCTCCGTGGAGTCCGTGGTCCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGACGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGCGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTATGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCCGGTGCAGCCGCTGAC
ACAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTTGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGATGTGAGCTGA
ATGGAGCCCGGCCCCGACGGCCCCGCCGCCTCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCACTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGAGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGGGAGGTGGTGAAGCACCCCTCCGTGGAGTCCGTGGTCCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGACGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGCGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTATGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCCGGTGCAGCCGCTGAC
ACAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTTGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGATGTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 22 .71 RPM |
| bodymap2_lung | 13 .80 RPM |
| bodymap2_breast | 22 .24 RPM |
| bodymap2_adipose | 26 .46 RPM |
| bodymap2_adrenal | 47 .43 RPM |
| bodymap2_skeletal_muscle | 35 .52 RPM |
| bodymap2_thyroid | 19 .21 RPM |
| bodymap2_prostate | 21 .25 RPM |
| bodymap2_colon | 24 .63 RPM |
| bodymap2_testis | 37 .29 RPM |
| bodymap2_brain | 17 .18 RPM |
| bodymap2_heart | 11 .17 RPM |
| bodymap2_white_blood_cells | 18 .53 RPM |
| bodymap2_lymph_node | 32 .38 RPM |
| bodymap2_ovary | 38 .38 RPM |
| bodymap2_kidney | 20 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009532 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001892 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000000138 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1426 | 64.29 | 50.66 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2313 | 66.28 | 56.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000116649 retrocopies