Parental gene: | SRM, ENSPTRG00000000138 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:11186715..11192197(-) |
>ENSPTRG00000000138
ATGGAGCCTGGCCCCGACGGCCCCGCCGCCTCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGAGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGTGAGGTGGTGAAGCACCCCTCCGTGGAGTCCGTGGTCCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGACGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCCGGTGCAGCCGCTGAC
GAAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTTGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGATGTGAGCTGA
ATGGAGCCTGGCCCCGACGGCCCCGCCGCCTCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGAGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGTGAGGTGGTGAAGCACCCCTCCGTGGAGTCCGTGGTCCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGACGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCCGGTGCAGCCGCTGAC
GAAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTTGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGATGTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 54 .73 RPM |
| SRP007412_cerebellum | 29 .18 RPM |
| SRP007412_heart | 14 .81 RPM |
| SRP007412_kidney | 22 .28 RPM |
| SRP007412_liver | 38 .66 RPM |
| SRP007412_testis | 11 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000116649 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009532 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001892 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_975 | 65.75 | 58.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1403 | 66.83 | 65.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1688 | 64.53 | 56.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000000138 retrocopies