Parental gene:

CCDC12, ENSG00000160799

Aliases:None
Description:coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:28332]
Organism:Human (Homo sapiens)
Coordinates:3:46963215..47023500(-)


>ENSG00000160799
ATGCAAGACGGGAGAAAAGGAGGGGCGTACGCGGGCAAGATGGAGGCAACTACGGCTGGTGTGGGCCGGCTAGAGGAAGA
GGCGTTGCGGCGAAAGGAACGGCTGAAGGCCCTACGGGAGAAAACCGGGCGCAAGGACAAGGAAGATGGGGAGCCAAAGA
CCAAGCATCTCAGAGAAGAGGAGGAAGAAGGCGAGAAGCACAGGGAACTTAGGCTGCGGAACTATGTCCCGGAGGATGAG
GACCTGAAGAAGAGGAGGGTGCCCCAGGCCAAACCGGTTGCAGTGGAGGAGAAGGTGAAGGAGCAGCTGGAGGCCGCCAA
GCCCGAGCCCGTCATCGAGGAGGTGGACCTGGCCAACCTCGCTCCTCGGAAGCCTGACTGGGACCTCAAGAGAGATGTGG
CCAAGAAGCTGGAGAAACTAAAAAAGCGGACTCAGAGGGCCATTGCCGAGCTGATCCGTGAAAGGCTGAAAGGCCAGGAA
GACAGCCTAGCCTCTGCAGTGGATGCTGCCACCGAACAAAAGACCTGTGACTCCGACTGA

Library Parental gene expression (RPM)
bodymap2_liver 8 .53 RPM
bodymap2_lung 15 .91 RPM
bodymap2_breast 11 .28 RPM
bodymap2_adipose 9 .88 RPM
bodymap2_adrenal 24 .79 RPM
bodymap2_skeletal_muscle 9 .68 RPM
bodymap2_thyroid 19 .36 RPM
bodymap2_prostate 17 .41 RPM
bodymap2_colon 11 .64 RPM
bodymap2_testis 16 .65 RPM
bodymap2_brain 9 .42 RPM
bodymap2_heart 6 .90 RPM
bodymap2_white_blood_cells 18 .98 RPM
bodymap2_lymph_node 15 .44 RPM
bodymap2_ovary 16 .27 RPM
bodymap2_kidney 16 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002280 ortholog_one2one 3 retrogenes
retro_cjac_1212, retro_cjac_2317, retro_cjac_3225,
Dipodomys ordii ENSDORG00000016567 ortholog_one2one 1 retrogene
retro_dord_303,
Echinops telfairi ENSETEG00000000030 ortholog_one2one 2 retrogenes
retro_etel_1445, retro_etel_2038,
Macaca mulatta ENSMMUG00000019810 ortholog_one2one 1 retrogene
retro_mmul_1025,
Mus musculus ENSMUSG00000019659 ortholog_one2one 1 retrogene
retro_mmus_1275,
Nomascus leucogenys ENSNLEG00000006219 ortholog_one2one 1 retrogene
retro_nleu_1282,
Ochotona princeps ENSOPRG00000005086 ortholog_one2one 1 retrogene
retro_opri_746,
Pongo abelii ENSPPYG00000013924 ortholog_one2one 2 retrogenes
retro_pabe_1957, retro_pabe_2033,
Pan troglodytes ENSPTRG00000014862 ortholog_one2one 1 retrogene
retro_ptro_1597,
Sarcophilus harrisii ENSSHAG00000003265 ortholog_one2one 1 retrogene
retro_shar_251,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2257 71.14 88.55
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Download FASTA sequences of all ENSG00000160799 retrocopies