RetrogeneDB ID: | retro_etel_2038 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_37987:584..831(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC12 | ||
Ensembl ID: | ENSETEG00000000030 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:28332] |
Percent Identity: | 54.12 % |
Parental protein coverage: | 73.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | REKTGRKDKQEAEPKT-KQLREEEEEGEKHRELRLRNYVPEDEDLKRRRVPPAKPVAVEEKVKEQLEAAK |
.E..G...K....PKT.K..REE.E...KHRELR....VPEDED...R.V..AKPV..EEKVKEQ....K | |
Retrocopy | KE*PGQQNKEYRKPKT<KCFREEKEVCKKHRELRVWSSVPEDEDI*GRKVSQAKPVIEEEKVKEQQKGTK |
Parental | PEP-VIEEVDLANLA |
.EP..IEE.DLA..A | |
Retrocopy | AEP<FIEEEDLATHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002280 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000016567 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000030 | 2 retrocopies |
retro_etel_1445, retro_etel_2038 ,
|
Homo sapiens | ENSG00000160799 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019810 | 1 retrocopy | |
Mus musculus | ENSMUSG00000019659 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006219 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005086 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013924 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000014862 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003265 | 1 retrocopy |