Parental gene:

MMU.4043, ENSMMUG00000017928

Aliases:None
Description:60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:F6XL94]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:20:87689202..87692142(+)


>ENSMMUG00000017928
ATGGCGCCCAGCCGGAATGGCATGATCTTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAA
CCAGCCGGCCCGGAAGATCCGCAGACGCAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGC
CCATCCGGCCCATCGTGCGCTGCCCCACGGTTCGGTACCACACGAAGGTGCGCGCCGGCCGCGGCTTCAGCCTGGAGGAG
CTCAGGGTGGCCGGCGTTCACAAGAAGGTGGCGCGGACCATCGGCATCTCTGTGGATCCGAGGAGGCGGAACAAGTCCAC
GGAGTCCCTGCAGGCCAACGTGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCC
CCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTGGCCACCCAGCTGACAGGACCGGTCATGCCCATCCGGAATGTC
TATAAGAAGGAGAAAGCTCGAGTCATTACTGAGGAGGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGCATGGCCCGTGC
CAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 178 .57 RPM
SRP007412_brain 55 .35 RPM
SRP007412_cerebellum 56 .18 RPM
SRP007412_heart 132 .96 RPM
SRP007412_kidney 111 .85 RPM
SRP007412_liver 241 .58 RPM
SRP007412_testis 98 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2one 1 retrogene
retro_acar_70,
Canis familiaris ENSCAFG00000019840 possible_ortholog 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus ENSCJAG00000009672 possible_ortholog 5 retrogenes
retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Echinops telfairi ENSETEG00000015057 ortholog_one2many 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Gorilla gorilla ENSGGOG00000025427 possible_ortholog 6 retrogenes
retro_ggor_1548, retro_ggor_1963, retro_ggor_2231, retro_ggor_2732, retro_ggor_562, retro_ggor_767,
Loxodonta africana ENSLAFG00000004054 ortholog_one2one 5 retrogenes
retro_lafr_659, retro_lafr_766, retro_lafr_827, retro_lafr_828, retro_lafr_829,
Monodelphis domestica ENSMODG00000003663 ortholog_one2one 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus ENSMUSG00000000740 possible_ortholog 23 retrogenes
retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2one 1 retrogene
retro_oana_78,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_579 79.41 64.45
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2. retro_mmul_593 69.93 72.04
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3. retro_mmul_737 61.87 63.51
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4. retro_mmul_781 74.68 72.99
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5. retro_mmul_2021 64.71 85.78
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6. retro_mmul_2150 69.44 51.18
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7. retro_mmul_2350 72.79 63.51
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Download FASTA sequences of all ENSMMUG00000017928 retrocopies