RetrogeneDB ID: | retro_mmus_732 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:85111273..85111790(+) | ||
Located in intron of: | ENSMUSG00000000804 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082806 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13 | ||
Ensembl ID: | ENSMUSG00000000740 | ||
Aliases: | Rpl13, A52, L13 | ||
Description: | ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922] |
Percent Identity: | 94.22 % |
Parental protein coverage: | 81.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTES |
.AKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKK.ARTIGISVDPRRRNKSTES | |
Retrocopy | EAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTES |
Parental | LQANVQR-LKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKA |
LQANVQR...EYRSKLI.FPRKPSAPKKGDSSAEE.KLATQL.GPVMPIRNVYKKEKARVITEEEKNFKA | |
Retrocopy | LQANVQR>VEEYRSKLIRFPRKPSAPKKGDSSAEEIKLATQLIGPVMPIRNVYKKEKARVITEEEKNFKA |
Parental | FASLRMARANARLFGIRAKRAKEAAEQDVEKKK |
FASL.MAR.NARLFGIRAKRAKEAAEQDVEKKK | |
Retrocopy | FASLLMARSNARLFGIRAKRAKEAAEQDVEKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 36 .87 RPM |
SRP007412_cerebellum | 0 .04 RPM | 16 .93 RPM |
SRP007412_heart | 0 .03 RPM | 41 .50 RPM |
SRP007412_kidney | 0 .04 RPM | 25 .02 RPM |
SRP007412_liver | 0 .00 RPM | 22 .80 RPM |
SRP007412_testis | 0 .00 RPM | 37 .64 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_18184 | 100 libraries | 155 libraries | 431 libraries | 208 libraries | 178 libraries |