RetrogeneDB ID: | retro_cfam_2122 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:102725193..102725584(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSCAFG00000019840 | ||
Aliases: | None | ||
Description: | ribosomal protein L13 [Source:HGNC Symbol;Acc:10303] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 62.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHT-KVRAGRGFSLEELRVAGIHK |
R...TWFN.PA.KI.R.KA.............S..I.PI..CPT.RYHT.K....R..S...L.VAG.HK | |
Retrocopy | RGMPTWFNPPAEKIHRLKACKPRHTTWPGALTSRSIHPILKCPTARYHT>KCKLARA-SVWKLWVAGLHK |
Parental | KVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQL |
KVA.TIGISV.PR..NKST..LQANV..LKEY.SK.ILFPRKP.A.KK..SSAEELKL..QL | |
Retrocopy | KVAWTIGISVNPRSQNKSTKFLQANVKWLKEYNSKPILFPRKPLALKKAGSSAEELKLVPQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 246 .20 RPM |
SRP017611_brain | 0 .00 RPM | 79 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 430 .30 RPM |
SRP017611_liver | 0 .00 RPM | 207 .46 RPM |