RetrogeneDB ID: | retro_acar_70 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:149129235..149129577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSACAG00000017072 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:H9GNX3] |
Percent Identity: | 88.7 % |
Parental protein coverage: | 54.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AVDPRRRNRSTEALQANVQRLKEYRSKLILFPRKPSAPKKGDSPAEELKMATQLSGPVMPIKNVHKKEKA |
AVDPR.RNR.TEALQANVQRLKEY.SKLILFPRKPSAPK.GDSPAEELKMA.QLSGPVMPI.NVHKKEKA | |
Retrocopy | AVDPRGRNRFTEALQANVQRLKEYHSKLILFPRKPSAPKNGDSPAEELKMAIQLSGPVMPITNVHKKEKA |
Parental | RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQEVEKKK |
.V.T.EEKNFKAFASLRM.RAN.RLFGI..KRAKEAAEQEVEKKK | |
Retrocopy | QVST-EEKNFKAFASLRMVRANVRLFGIQDKRAKEAAEQEVEKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .43 RPM | 1020 .60 RPM |
SRP009831_brain | 0 .05 RPM | 297 .30 RPM |
SRP009831_dewlap | 5 .23 RPM | 387 .70 RPM |
SRP009831_embryo | 0 .09 RPM | 686 .99 RPM |
SRP009831_heart | 0 .73 RPM | 648 .84 RPM |
SRP009831_liver | 0 .12 RPM | 1192 .09 RPM |
SRP009831_lung | 0 .60 RPM | 721 .69 RPM |
SRP009831_ovary | 6 .02 RPM | 237 .94 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 335 .33 RPM |