Parental gene: | G3bp1, ENSMUSG00000018583 |
| Aliases: | None |
| Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 11:55469684..55504838(+) |
>ENSMUSG00000018583
ATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGCGACAGTACTACACTCTGCTGAACCAGGCCCC
GGACATGTTGCACAGATTTTATGGAAAGAACTCTTCCTATGCCCACGGGGGCTTGGATTCCAACGGGAAGCCAGCAGATG
CAGTCTACGGGCAGAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATCCGCCACGTG
GATGCTCACGCAACTCTGAATGACGGGGTGGTGGTCCAAGTGATGGGGCTACTGTCCAACAACAACCAGGCTCTGCGGAG
GTTCATGCAGACCTTTGTCCTTGCTCCTGAGGGCTCTGTTGCCAACAAATTCTATGTTCACAACGACATCTTCAGGTACC
AAGATGAGGTCTTCGGTGGCTTTGTCACAGAGCCTCAAGAGGAATCCGAGGAAGAAGTAGAAGAACCTGAAGAAAGACAG
CAGACACCAGAGGTGGTGCCTGATGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAGGAGCATTTAGA
GGAGCCTGTAGTGGAACCAGAACCGGAGCCAGAGCCGGAGCCGGAGCCGGAACCTGTGTCCGACATTCAAGAGGACAAGC
CTGAGGCTGCATTGGAAGAAGCTGCTCCCGACGATGTGCAGAAGAGCACTTCCCCGGCCCCGGCTGATGTGGCCCCGGCA
CAGGAGGACTTGAGGACGTTTTCTTGGGCATCTGTGACGAGTAAGAACCTTCCTCCCAGTGGGGCTGTTCCAGTGACGGG
GACACCACCTCATGTGGTCAAAGTGCCAGCGTCACAGCCCCGTCCAGAATCTAAACCTGACTCTCAGATCCCACCACAAA
GGCCTCAGAGAGATCAGAGAGTTCGAGAGCAGCGAATCAATATCCCTCCTCAGAGAGGACCCCGACCAATCCGTGAGGCT
GGTGAACCAGGAGATGTGGAACCTCGAAGGATGGTGAGGCACCCTGACAGTCACCAGCTCTTCATTGGGAACCTGCCACA
TGAGGTTGACAAGTCGGAACTGAAGGATTTTTTCCAAAATTTTGGCAATGTGGTGGAGCTGCGCATCAACAGTGGTGGGA
AGTTACCCAATTTCGGTTTTGTTGTGTTTGATGATTCTGAACCTGTTCAGAAGGTCCTTAGTAATAGGCCCATCATGTTC
CGAGGCGCGGTCCGCCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCAGAGAAGGCGACCGCAGGGATAACCGCCTTCG
GGGACCTGGAGGCCCCCGTGGTGGGCCGAGTGGTGGGATGAGAGGCCCTCCCCGCGGAGGCATGGTGCAGAAACCAGGCT
TTGGCGTGGGCAGGGGGATTACAACTCCAAGGCAGTGA
ATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGCGACAGTACTACACTCTGCTGAACCAGGCCCC
GGACATGTTGCACAGATTTTATGGAAAGAACTCTTCCTATGCCCACGGGGGCTTGGATTCCAACGGGAAGCCAGCAGATG
CAGTCTACGGGCAGAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATCCGCCACGTG
GATGCTCACGCAACTCTGAATGACGGGGTGGTGGTCCAAGTGATGGGGCTACTGTCCAACAACAACCAGGCTCTGCGGAG
GTTCATGCAGACCTTTGTCCTTGCTCCTGAGGGCTCTGTTGCCAACAAATTCTATGTTCACAACGACATCTTCAGGTACC
AAGATGAGGTCTTCGGTGGCTTTGTCACAGAGCCTCAAGAGGAATCCGAGGAAGAAGTAGAAGAACCTGAAGAAAGACAG
CAGACACCAGAGGTGGTGCCTGATGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAGGAGCATTTAGA
GGAGCCTGTAGTGGAACCAGAACCGGAGCCAGAGCCGGAGCCGGAGCCGGAACCTGTGTCCGACATTCAAGAGGACAAGC
CTGAGGCTGCATTGGAAGAAGCTGCTCCCGACGATGTGCAGAAGAGCACTTCCCCGGCCCCGGCTGATGTGGCCCCGGCA
CAGGAGGACTTGAGGACGTTTTCTTGGGCATCTGTGACGAGTAAGAACCTTCCTCCCAGTGGGGCTGTTCCAGTGACGGG
GACACCACCTCATGTGGTCAAAGTGCCAGCGTCACAGCCCCGTCCAGAATCTAAACCTGACTCTCAGATCCCACCACAAA
GGCCTCAGAGAGATCAGAGAGTTCGAGAGCAGCGAATCAATATCCCTCCTCAGAGAGGACCCCGACCAATCCGTGAGGCT
GGTGAACCAGGAGATGTGGAACCTCGAAGGATGGTGAGGCACCCTGACAGTCACCAGCTCTTCATTGGGAACCTGCCACA
TGAGGTTGACAAGTCGGAACTGAAGGATTTTTTCCAAAATTTTGGCAATGTGGTGGAGCTGCGCATCAACAGTGGTGGGA
AGTTACCCAATTTCGGTTTTGTTGTGTTTGATGATTCTGAACCTGTTCAGAAGGTCCTTAGTAATAGGCCCATCATGTTC
CGAGGCGCGGTCCGCCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCAGAGAAGGCGACCGCAGGGATAACCGCCTTCG
GGGACCTGGAGGCCCCCGTGGTGGGCCGAGTGGTGGGATGAGAGGCCCTCCCCGCGGAGGCATGGTGCAGAAACCAGGCT
TTGGCGTGGGCAGGGGGATTACAACTCCAAGGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 58 .22 RPM |
| SRP007412_cerebellum | 51 .45 RPM |
| SRP007412_heart | 92 .49 RPM |
| SRP007412_kidney | 84 .14 RPM |
| SRP007412_liver | 51 .42 RPM |
| SRP007412_testis | 40 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000006626 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000016470 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022143 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001726 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013186 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1389 | 87.94 | 54.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_3229 | 92.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_3688 | 79.68 | 53.98 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000018583 retrocopies