RetrogeneDB ID: | retro_rnor_1282 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:88136459..88137533(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | G3bp1 | ||
Ensembl ID: | ENSRNOG00000013186 | ||
Aliases: | G3bp1, G3bp, RGD1310666 | ||
Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:RefSeq peptide;Acc:NP_598249] |
Percent Identity: | 72.45 % |
Parental protein coverage: | 76.99 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNF |
MVMEKPSPL.VGREFVRQYYTLL.QA.DMLHRF.GK..SYAHGGLDSNGKPADA....KEIHRKV.SQN. | |
Retrocopy | MVMEKPSPLPVGREFVRQYYTLLIQATDMLHRF*GKSFSYAHGGLDSNGKPADAIFL*KEIHRKVISQNL |
Parental | TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGG |
T.CH..IRHV.AHA.LN.GVVVQVMGLLSNN.QALRRFMQT..L.P.GSVANK..VHNDI.RYQDE.F.G | |
Retrocopy | TKCHSNIRHVEAHAILNEGVVVQVMGLLSNNSQALRRFMQTLALVPKGSVANKV*VHNDIIRYQDEIFRG |
Parental | FVTEPQEESEEEVEEPEERQQSPEVVADDSGTFYDQTVSNDLEEHLEEPVVEPEPEPEPEPEPEPVSDIQ |
FVTEPQEES.E.VE.PEERQQ.PEVV.DDSGTFYDQTVSNDLE.HLEEPV...........EPEP..... | |
Retrocopy | FVTEPQEESKE-VEGPEERQQTPEVVPDDSGTFYDQTVSNDLEDHLEEPVXXXXXXXXXDAEPEPAVQEI |
Parental | EDKP---EPALEEAAPEDVQKSASPAPADVAPAQEDLRTFSWASVTSKNLPPSGAVPVT-GTPPHVVKVP |
...P...E.A.E.............AP.DVAP..ED.RTFSWA.VT.K..PPSGAVPVT..TPPHVVKVP | |
Retrocopy | KPEPALEEAAPEDVQKSASLVPEEAAPEDVAPT*EDMRTFSWAPVTTKKFPPSGAVPVT<ATPPHVVKVP |
Parental | ASQPRPESK-PDSQIPPQRPQRDQRAREQRINIPPQRGPRPIREAGEPGDVEPRRMVRHPDSHQLFIGNL |
A..P.P....PDSQIPPQRPQRDQR..EQ.INIPPQRGP.P.REAGEPGDVEP.RMVRH.D.HQLF.GNL | |
Retrocopy | A--PQPRQN>PDSQIPPQRPQRDQRVQEQQINIPPQRGP*PVREAGEPGDVEP*RMVRHLDGHQLFTGNL |
Parental | PHEVDKSELKDFF |
PHEVDKSE.K..F | |
Retrocopy | PHEVDKSEPKHYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .96 RPM |
SRP017611_liver | 0 .20 RPM | 61 .99 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006626 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018758 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000017447 | 1 retrocopy | |
Homo sapiens | ENSG00000145907 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013661 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018583 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022143 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001726 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015968 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017438 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017250 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013186 | 1 retrocopy |
retro_rnor_1282 ,
|
Tupaia belangeri | ENSTBEG00000004386 | 12 retrocopies | |
Tarsius syrichta | ENSTSYG00000004570 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009072 | 1 retrocopy |