Parental gene: | ENSCPOG00000006626 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_81:4016114..4027993(+) |
>ENSCPOG00000006626
CAGGTTGACTTGACCAAAGCAATGGTGATGGAGAAGCCGAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGAGACAGTATTA
CACGCTGCTGAACCAGGCCCCGGACATGCTGCACCGATTTTATGGAAAGAACTCTTCCTATGTCCACGGAGGATTGGATT
CCAATGGGAAACCTGCAGATGCAGTCTATGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAGAACTTCACCAACTGC
CACACCAAGATCCGTCATGTGGACGCACATGCTACACTCAACGACGGCGTGGTGGTCCAGGTCATGGGGCTGCTCTCCAA
CAACAACCAGGCGTTGCGGAGGTTCATGCAAACGTTTGTCCTTGCTCCCGAGGGCTCTGTTGCAAATAAATTCTATGTTC
ACAATGATATCTTCAGATACCAGGATGAGGTCTTTGGCGGCTTTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTA
GAGGAACCTGAAGAAAGACGGCAGACACCTGAAGCTGTACCTGATGATTCTGGAACTTTTTATGATCAACCTGTGAGAAG
CAATGACGTGGAAGAACATTTAGAGGAACCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAGCAAGAACCTG
CATCTGAGGTCCAGGAGGAGAAGGCCGAGCCTGTTTTGGAAGAAGCTGCTCCCGAGGATGCTCAGAAGAGCTCTTCTCCT
GCGCCTGCCGACCCAGCCCAGACGGCGCAGGAAGACTTGAGGACGTTTTCGTGGGCGTCTGTGACCAGTAAGAACCTCCC
ACCCAGCGGTGCTGTCCCCGTTACAGGGATACCGCCCCACGTGGTGAAAGCGCCGGCGTCGCAGCCCCGTCCAGAGTCTA
AACCTGAATCTCAGCTTCCACCGCAGAGGCCTCAGAGGGATCAAAGAGTGCGAGAGCAGCGAATAAATATTCCTCCCCAG
AGGGGGCCTAGACCAATTCGTGAGGCTGGGGAGCAAGGTGATGCTGAACCCCGGAGAATCGTGAGACACCCTGACAGCCA
CCAGCTCTTCATCGGTAACCTGCCTCATGAGGTGGACAAATCGGAACTTAAAGATTTCTTTCAAAGTTACGGCAACGTGG
TGGACCTGCGCATCAACAGTGGCGGGAAGTTACCCAATTTTGGCTTTGTTGTGTTCGATGATTCTGAGCCTGTGCAGAAG
GTCCTTAGCAACAGGCCTATCATGTTCAGAGGTGAAGTCCGTCTGAATGTGGAAGAGAAGAAGACCCGTGCTGCCAGGGA
AGGGGACCGACGGGACAACCGCCTGCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGCGGTGGCCTGAGAGGCCCTCCGC
GCGGAGGAATGGTGCAGAAGCCCGGCTTCGGAGTGGGAAGGGGCCTTGCTCCCAGGCAGTGA
CAGGTTGACTTGACCAAAGCAATGGTGATGGAGAAGCCGAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGAGACAGTATTA
CACGCTGCTGAACCAGGCCCCGGACATGCTGCACCGATTTTATGGAAAGAACTCTTCCTATGTCCACGGAGGATTGGATT
CCAATGGGAAACCTGCAGATGCAGTCTATGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAGAACTTCACCAACTGC
CACACCAAGATCCGTCATGTGGACGCACATGCTACACTCAACGACGGCGTGGTGGTCCAGGTCATGGGGCTGCTCTCCAA
CAACAACCAGGCGTTGCGGAGGTTCATGCAAACGTTTGTCCTTGCTCCCGAGGGCTCTGTTGCAAATAAATTCTATGTTC
ACAATGATATCTTCAGATACCAGGATGAGGTCTTTGGCGGCTTTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTA
GAGGAACCTGAAGAAAGACGGCAGACACCTGAAGCTGTACCTGATGATTCTGGAACTTTTTATGATCAACCTGTGAGAAG
CAATGACGTGGAAGAACATTTAGAGGAACCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAGCAAGAACCTG
CATCTGAGGTCCAGGAGGAGAAGGCCGAGCCTGTTTTGGAAGAAGCTGCTCCCGAGGATGCTCAGAAGAGCTCTTCTCCT
GCGCCTGCCGACCCAGCCCAGACGGCGCAGGAAGACTTGAGGACGTTTTCGTGGGCGTCTGTGACCAGTAAGAACCTCCC
ACCCAGCGGTGCTGTCCCCGTTACAGGGATACCGCCCCACGTGGTGAAAGCGCCGGCGTCGCAGCCCCGTCCAGAGTCTA
AACCTGAATCTCAGCTTCCACCGCAGAGGCCTCAGAGGGATCAAAGAGTGCGAGAGCAGCGAATAAATATTCCTCCCCAG
AGGGGGCCTAGACCAATTCGTGAGGCTGGGGAGCAAGGTGATGCTGAACCCCGGAGAATCGTGAGACACCCTGACAGCCA
CCAGCTCTTCATCGGTAACCTGCCTCATGAGGTGGACAAATCGGAACTTAAAGATTTCTTTCAAAGTTACGGCAACGTGG
TGGACCTGCGCATCAACAGTGGCGGGAAGTTACCCAATTTTGGCTTTGTTGTGTTCGATGATTCTGAGCCTGTGCAGAAG
GTCCTTAGCAACAGGCCTATCATGTTCAGAGGTGAAGTCCGTCTGAATGTGGAAGAGAAGAAGACCCGTGCTGCCAGGGA
AGGGGACCGACGGGACAACCGCCTGCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGCGGTGGCCTGAGAGGCCCTCCGC
GCGGAGGAATGGTGCAGAAGCCCGGCTTCGGAGTGGGAAGGGGCCTTGCTCCCAGGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 29 .03 RPM |
| SRP017611_kidney | 38 .11 RPM |
| SRP017611_brain | 18 .92 RPM |
| SRP040447_lung | 37 .18 RPM |
| SRP040447_skeletal_muscle | 60 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000018758 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000017447 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000145907 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000012235 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013661 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000018583 | ortholog_one2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000016470 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022143 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001726 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015968 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017438 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000017250 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013186 | ortholog_many2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000004386 | possible_ortholog | 12 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004570 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009072 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_464 | 71.37 | 50.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1119 | 72.13 | 60.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000006626 retrocopies