Parental gene: | Tuba1b, ENSMUSG00000023004 |
| Aliases: | Tuba1b, Tuba2 |
| Description: | tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 15:98931424..98934565(-) |
>ENSMUSG00000023004
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCATGTGCCCCGGGCAGTGTTCGTAGACCTGGAACCCACGGTCATCGATGAAGTTCGCACC
GGCACCTACCGCCAGCTCTTCCATCCTGAGCAGCTCATCACAGGCAAGGAGGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCCTGGACAGGATTCGCAAGCTGGCTGACCAGTGCACAGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGCTTCACCTCCCTGCTGATGGAGCGGCTCTCTGTGGAT
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACCAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGCATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTATACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTAGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCCGGTGGTGACCTGGCCAAGGTGCAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTAGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGTGAGTTCTCTGAGGCCCGTGAGGACATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGCGAGGGGGAGGAAGAAGGAGAGGAGTACTAA
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCATGTGCCCCGGGCAGTGTTCGTAGACCTGGAACCCACGGTCATCGATGAAGTTCGCACC
GGCACCTACCGCCAGCTCTTCCATCCTGAGCAGCTCATCACAGGCAAGGAGGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCCTGGACAGGATTCGCAAGCTGGCTGACCAGTGCACAGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGCTTCACCTCCCTGCTGATGGAGCGGCTCTCTGTGGAT
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACCAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGCATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTATACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTAGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCCGGTGGTGACCTGGCCAAGGTGCAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTAGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGTGAGTTCTCTGAGGCCCGTGAGGACATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGCGAGGGGGAGGAAGAAGGAGAGGAGTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 77 .45 RPM |
| SRP007412_cerebellum | 63 .92 RPM |
| SRP007412_heart | 36 .14 RPM |
| SRP007412_kidney | 16 .90 RPM |
| SRP007412_liver | 8 .82 RPM |
| SRP007412_testis | 8 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012244 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020874 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000123416 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010779 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000011167 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000015206 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000043091 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000067338 | within_species_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012950 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000190 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1562 | 68.56 | 88.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1607 | 82.96 | 98.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1742 | 98.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1987 | 97.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_3297 | 97.56 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_3327 | 99.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000023004 retrocopies