Parental gene: | Hax1, ENSMUSG00000027944 |
| Aliases: | Hax1, HAX-1, HSP1BP-1, Hs1bp1, SIG-111, Silg111, mHAX-1s |
| Description: | HCLS1 associated X-1 [Source:MGI Symbol;Acc:MGI:1346319] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 3:89995456..89998686(-) |
>ENSMUSG00000027944
ATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTTTTGGAGGGAT
GACTCGAGATGATGACGACGATGATGATGATGATGACGAAGCGGAGGAAGACAGAGGCGCGTGGGGTCGAGAGAGCTATG
CGTTTGATGGTTCTCAGCCTCCAGAGGAATTCGGTTTCAGCTTCAGCCCCAGGGGAGGGATGCGATTCCACGGCAACTTT
GGCTTTGATGATCTAGTACGAGATTTTAATAGCATCTTCAGCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGA
ACTTCCAGGTCCTGAGTCAGAAACACCTGGTGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACC
CAGATAGTCACCAACCCAGGATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACCAGCTCCAGAT
TGGGGGTCGCAGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCTAGAGCCAAAGAGGACAAAGA
TCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCTTCAACCCCAGCCCAAATCGTATTTCAAAAGTATCTCTG
TGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACGCCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACA
GTGACCCATCAAGAAGCCCATGACAGTTCCAGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTC
CATTCTGGATTTGCTACTAGGACGTTGGTTTCGGTCCCGATAG
ATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTTTTGGAGGGAT
GACTCGAGATGATGACGACGATGATGATGATGATGACGAAGCGGAGGAAGACAGAGGCGCGTGGGGTCGAGAGAGCTATG
CGTTTGATGGTTCTCAGCCTCCAGAGGAATTCGGTTTCAGCTTCAGCCCCAGGGGAGGGATGCGATTCCACGGCAACTTT
GGCTTTGATGATCTAGTACGAGATTTTAATAGCATCTTCAGCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGA
ACTTCCAGGTCCTGAGTCAGAAACACCTGGTGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACC
CAGATAGTCACCAACCCAGGATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACCAGCTCCAGAT
TGGGGGTCGCAGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCTAGAGCCAAAGAGGACAAAGA
TCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCTTCAACCCCAGCCCAAATCGTATTTCAAAAGTATCTCTG
TGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACGCCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACA
GTGACCCATCAAGAAGCCCATGACAGTTCCAGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTC
CATTCTGGATTTGCTACTAGGACGTTGGTTTCGGTCCCGATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 12 .08 RPM |
| SRP007412_cerebellum | 15 .68 RPM |
| SRP007412_heart | 10 .09 RPM |
| SRP007412_kidney | 31 .34 RPM |
| SRP007412_liver | 25 .31 RPM |
| SRP007412_testis | 41 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009660 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000016727 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000012587 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000143575 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000010414 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000017215 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011290 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001380 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000045647 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014445 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_353 | 81.49 | 99.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1306 | 72.62 | 58.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2000 | 93.95 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000027944 retrocopies