RetrogeneDB ID: | retro_dnov_1537 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22972:19403..19929(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAX1 | ||
Ensembl ID: | ENSDNOG00000016727 | ||
Aliases: | None | ||
Description: | HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:16915] |
Percent Identity: | 68.89 % |
Parental protein coverage: | 63.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SPRFGVPQHPEEFGFSFSPGGGIHFHDNFGFDDLVRDFNNIFSEMGAWTLPSHS-DLPGPESETPGERWR |
SPRFGVPQ..EE.GFSF.PGG.I.FHDNFGF.DL..DFNN.FSEMG.WTLPS.S...PGPESET.GER.R | |
Retrocopy | SPRFGVPQPSEELGFSFNPGGRIIFHDNFGFGDLLGDFNNFFSEMGGWTLPSRSPEPPGPESETHGERQR |
Parental | EGETLRDSMLKYPDSHQPRIFGGVL--ESDAGTESPKSAPDWGSQRPFHRFDDMWPV-TPHPRTREDNDL |
EGE.LRDS.LK.PDSHQ.R...G....ES.AGTES.KSAPDWGSQRPFHRFDDMW.V..P......D..L | |
Retrocopy | EGEMLRDSILKCPDSHQSRLWEGEVS*ESYAGTESSKSAPDWGSQRPFHRFDDMWSV>CPREDNDLDSQL |
Parental | DSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGTVEERR |
........L.P..QP..KSYFKSISVTKITKPDG.VEE.R | |
Retrocopy | SQESLRPVLQP--QP--KSYFKSISVTKITKPDGLVEEHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 63 .01 RPM |
SRP012922_cerebellum | 0 .00 RPM | 57 .87 RPM |
SRP012922_heart | 0 .00 RPM | 95 .36 RPM |
SRP012922_kidney | 0 .00 RPM | 85 .70 RPM |
SRP012922_liver | 0 .00 RPM | 71 .06 RPM |
SRP012922_lung | 0 .00 RPM | 76 .67 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 105 .58 RPM |
SRP012922_spleen | 0 .00 RPM | 71 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009660 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016727 | 1 retrocopy |
retro_dnov_1537 ,
|
Dipodomys ordii | ENSDORG00000012587 | 1 retrocopy | |
Homo sapiens | ENSG00000143575 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010414 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027944 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011290 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001380 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000045647 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014445 | 1 retrocopy |