RetrogeneDB ID:

retro_mmur_1284

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_39225:6865..7559(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HAX1
Ensembl ID:ENSMICG00000010414
Aliases:None
Description:HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:16915]


Retrocopy-Parental alignment summary:






>retro_mmur_1284
CCAAGGTTTGATGGTTCCCATTCCCCTGAAGAATCTGGCTTCAGCTTCAGTTTCAGCCCAGGAGGAGGGATGCATTTCCA
TGGTAACTTTGGCTTTGAGGACCTAGTATGGGATTTCAATAGCATCTTCAACCAGATGGGGGCCTGGACCTTACCTTCCC
ATACTCCTGAACTGCCAGGTCCTGAGTCAGATACACCTGGTGAGAGACTGCGGGAGGGATGAACACTTTGGGACTCAATG
CTTAAGTATCCAGATTGTCACCAGCCCAGGATCTTTAGGGGGCGGGTCTTAGAGAGTGACGCAAGAACTGAATCCCCTAA
ACCAGCACCAGACTGGGGTTCTCAGAGACCTTTTCATAGGTTTCATGATATATGGCCTGTGACCCCCCATCCTAGAGCCA
GAGAGGACAATGATGTTGATTTCCAGGTCTCCCAGGAGGGTCTTGGCCTAGTTTTACAGCCCCAGCCCAAATCCTATTTC
AAGAGCATCTCTGTGACCAAGATCACTGGGCCAGATGGGATAGTGGAGGAGCACCGGACTGTGGTAGACAGTGAGGGCCA
GACAGAGACCACAGTAACCTGACAAGAGGCAGACAGCAGTTGTAGAAGTGATCTAGAATCACCAAGACCTCCGACCATGG
ATGATGCTTTTTCCATCCTGGATTTATTCCTAGGACTTTGGGTTCCAGTCTCGG

ORF - retro_mmur_1284 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.21 %
Parental protein coverage: 83.64 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPRFDGPQPPEEFGFSFSFSPGGGMHFHDNFGFDDLVRDFNSIFSEMGAWTLPSHPPELPGPASETPGERL
PRFDG...PEE.GFSFSFSPGGGMHFH.NFGF.DLV.DFNSIF..MGAWTLPSH.PELPGP.S.TPGERL
RetrocopyPRFDGSHSPEESGFSFSFSPGGGMHFHGNFGFEDLVWDFNSIFNQMGAWTLPSHTPELPGPESDTPGERL
ParentalREGQTLRDSMLKYPDSHQPRIFGG-VLESDARPESPKPAPDWGSQRPFHRFDDIWPVTPHPRAREDNDLD
REG.TL.DSMLKYPD.HQPRIF.G.VLESDAR.ESPKPAPDWGSQRPFHRF.DIWPVTPHPRAREDND.D
RetrocopyREG*TLWDSMLKYPDCHQPRIFRGRVLESDARTESPKPAPDWGSQRPFHRFHDIWPVTPHPRAREDNDVD
ParentalSQVSQEGLGPVLQPQPKSYFKSISVTKITRPDGIVEEHRTVVDSEGRKETTVTRQEADSSPRSDPESPRP
.QVSQEGLG.VLQPQPKSYFKSISVTKIT.PDGIVEEHRTVVDSEG..ETTVT.QEADSS.RSD.ESPRP
RetrocopyFQVSQEGLGLVLQPQPKSYFKSISVTKITGPDGIVEEHRTVVDSEGQTETTVT*QEADSSCRSDLESPRP
ParentalPAMDDAFSILDLFLGRW-FRSR
P.MDDAFSILDLFLG.W.F.SR
RetrocopyPTMDDAFSILDLFLGLW>FQSR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1284 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1284 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000096601 retrocopy
Dasypus novemcinctus ENSDNOG000000167271 retrocopy
Dipodomys ordii ENSDORG000000125871 retrocopy
Homo sapiens ENSG000001435751 retrocopy
Microcebus murinus ENSMICG00000010414 2 retrocopies
retro_mmur_1118, retro_mmur_1284 ,
Monodelphis domestica ENSMODG000000172151 retrocopy
Mus musculus ENSMUSG000000279443 retrocopies
Nomascus leucogenys ENSNLEG000000112901 retrocopy
Pan troglodytes ENSPTRG000000013801 retrocopy
Rattus norvegicus ENSRNOG000000456471 retrocopy
Tupaia belangeri ENSTBEG000000144451 retrocopy



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