RetrogeneDB ID: | retro_hsap_4912 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:147279531..147280192(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233467 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAX1 | ||
Ensembl ID: | ENSG00000143575 | ||
Aliases: | HAX1, HCLSBP1, HS1BP1, SCN3 | ||
Description: | HCLS1 associated protein X-1 [Source:HGNC Symbol;Acc:16915] |
Percent Identity: | 89.24 % |
Parental protein coverage: | 79.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EEFGFGFSFSPGGGIRFHDNFGFDDLVRDFNSIFSDMGAWTLPSHPPELPGPESETPGERLREGQTLRDS |
.EFGF.FSFSPGGGIRFHDNFGFDDLV.DFNSIFS.MGAWTLPSHPPELPG.ESETPGERLREGQ.LR.S | |
Retrocopy | KEFGFDFSFSPGGGIRFHDNFGFDDLVQDFNSIFSNMGAWTLPSHPPELPGSESETPGERLREGQALRES |
Parental | MLKYPDSHQPRIFGGVLESDARSESPQPAPDWGSQRPFHRFDDVWPMDPHPRTREDNDLDSQVSQEGLGP |
MLKYPDSHQPRIF.GVLESDARSESP.PAPD.GSQRPFH.FDDVWP.DPHPRTREDNDLDS.VSQE.LGP | |
Retrocopy | MLKYPDSHQPRIFEGVLESDARSESPKPAPD*GSQRPFHGFDDVWPVDPHPRTREDNDLDSRVSQERLGP |
Parental | VLQPQPKS-YFKSISVTKITKPDGIVEERRTVVDSEGRTETTVTRHEADSSPR-GDPESPRPPALDDAFS |
VLQPQP.S.YFKSISVTKITKPDGIVEER.TVVDSEG.TET.VT.HEADSSPR..DP.SPRPPALDDAFS | |
Retrocopy | VLQPQPRS<YFKSISVTKITKPDGIVEERWTVVDSEGQTETAVTQHEADSSPR<DDPKSPRPPALDDAFS |
Parental | ILDLFLGRWFRSR |
ILDLFLG.WFRSR | |
Retrocopy | ILDLFLGCWFRSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 39 .00 RPM |
bodymap2_adrenal | 0 .02 RPM | 47 .94 RPM |
bodymap2_brain | 0 .00 RPM | 33 .78 RPM |
bodymap2_breast | 0 .02 RPM | 47 .76 RPM |
bodymap2_colon | 0 .00 RPM | 52 .73 RPM |
bodymap2_heart | 0 .00 RPM | 70 .04 RPM |
bodymap2_kidney | 0 .00 RPM | 54 .55 RPM |
bodymap2_liver | 0 .00 RPM | 50 .38 RPM |
bodymap2_lung | 0 .00 RPM | 39 .01 RPM |
bodymap2_lymph_node | 0 .00 RPM | 50 .84 RPM |
bodymap2_ovary | 0 .00 RPM | 56 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 72 .40 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 74 .68 RPM |
bodymap2_testis | 0 .00 RPM | 73 .04 RPM |
bodymap2_thyroid | 0 .00 RPM | 59 .90 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 41 .82 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_197919 | 1017 libraries | 715 libraries | 94 libraries | 2 libraries | 1 library |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3275 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009660 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016727 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012587 | 1 retrocopy | |
Homo sapiens | ENSG00000143575 | 1 retrocopy |
retro_hsap_4912 ,
|
Microcebus murinus | ENSMICG00000010414 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027944 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011290 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001380 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000045647 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014445 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |