RetrogeneDB ID: | retro_dord_769 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_8622:51451..51976(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hax1 | ||
Ensembl ID: | ENSDORG00000012587 | ||
Aliases: | None | ||
Description: | HCLS1 associated X-1 [Source:MGI Symbol;Acc:MGI:1346319] |
Percent Identity: | 96.57 % |
Parental protein coverage: | 63.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELPGPESETPGERLREGQTLRDSMLKYPDSHQPKIFGGA-LESDTRTETSKPAPDWGSPRPFHRFDDMWP |
ELPGPESETPGERLREGQ.L.DSMLKYPDSHQPKIF....LESDTRTETSKPAPDWGSPRPFHRFDDMWP | |
Retrocopy | ELPGPESETPGERLREGQMLPDSMLKYPDSHQPKIFXXXXLESDTRTETSKPAPDWGSPRPFHRFDDMWP |
Parental | VTPHPRAREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGKVEEHRTIVDSEGRRETTITHQE |
VTPHPRAREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGKVEEHRTIVDSEGRRETTITHQE | |
Retrocopy | VTPHPRAREDNDLDSQVSQEGLGPVLQPQPKSYFKSISVTKITKPDGKVEEHRTIVDSEGRRETTITHQE |
Parental | ADGSLRVDPESPRPPALDDAFSILDLFLGRWFGPR |
ADGSLRVDPESPRPPALDDAFSILDLFLGRWFGPR | |
Retrocopy | ADGSLRVDPESPRPPALDDAFSILDLFLGRWFGPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009660 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016727 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012587 | 1 retrocopy |
retro_dord_769 ,
|
Homo sapiens | ENSG00000143575 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010414 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027944 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011290 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001380 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000045647 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014445 | 1 retrocopy |