Parental gene: | SPPL3, ENSPPYG00000005041 |
| Aliases: | None |
| Description: | signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:30424] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:122993319..123046812(-) |
>ENSPPYG00000005041
TCCATTAGGACTCACTGCATGGCCTATTCCCTGGTGGATTCCAGTCAAGTGTCTACATTTCTGATTTCCATTCTTCTTAT
AGTCTATGGTAGTTTCAGGTCCCTTAATATGGACTTTGAAAATCAAGATAAGGAGAAAGACAGTAATAGTTCTTCTGGGT
CTTTCAATGGCAACAGCACCAATAATAGCATCCAAACAATTGACTCTACCCAGGCTCTGTTCCTTCCAATTGGAGCATCT
GTCTCTCTTTTAGTAATGTTCTTCTTCTTTGACTCAGTTCAAGTAGTTTTTACAATATGTACAGCAGTTCTTGCAACGAT
AGCTTTTGCTTTTCTTCTCCTCCCGATGTGCCAGTATTTAACAAGACCCTGCTCACCTCAGAACAAGATTTCCTTTGGTT
GCTGTGGACGTTTCACTGCTGCTGAGTTGCTGTCATTCTCTCTGTCTGTCATGCTCGTCCTCATCTGGGTTCTCACTGGC
CATTGGCTTCTCATGGATGCACTGGCCATGGGCCTCTGTGTCGCCATGATCGCCTTCGTCCGCCTGCCGAGCCTCAAGGT
CTCCTGCCTGCTTCTCTCAGGGCTTCTCATCTATGATGTCTTTTGGGTATTTTTCTCAGCCTACATCTTCAATAGCAATG
TCATGGTGAAGGTGGCCACTCAGCCGGCTGACAATCCCCTTGATGTTCTATCCCGGAAGCTCCACCTGGGGCCCAATGTT
GGGCGTGATGTTCCTCGCCTGTCTCTGCCTGGAAAACTGGTCTTCCCAAGCTCCACTGGCAGCCACTTCTCCATGTTGGG
CATCGGAGACATCGTTATGCCTGGTCTCCTACTATGCTTTGTCCTTCGCTATGACAACTACAAAAAACAAGCCAGTGGGG
ACTCCTGTGGGGCCCCTGGACCTGCCAACATCTCCGGGCGCATGCAGAAGGTCTCCTACTTTCACTGCACCCTCATCGGA
TACTTTGTAGGCCTGCTCACTGCTACTGTGGCGTCTCGCATTCACCGGGCCGCCCAGCCCGCCCTTCTCTATTTGGTGCC
ATTTACTTTATTGCCACTCCTCACGATGGCCTATTTAAAGGGCGACCTCCGGCGGATGTGGTCTGAGCCTTTCCACTCCA
AGTCCAGCAGCTCCCGGTTCCTGGAAGTATGA
TCCATTAGGACTCACTGCATGGCCTATTCCCTGGTGGATTCCAGTCAAGTGTCTACATTTCTGATTTCCATTCTTCTTAT
AGTCTATGGTAGTTTCAGGTCCCTTAATATGGACTTTGAAAATCAAGATAAGGAGAAAGACAGTAATAGTTCTTCTGGGT
CTTTCAATGGCAACAGCACCAATAATAGCATCCAAACAATTGACTCTACCCAGGCTCTGTTCCTTCCAATTGGAGCATCT
GTCTCTCTTTTAGTAATGTTCTTCTTCTTTGACTCAGTTCAAGTAGTTTTTACAATATGTACAGCAGTTCTTGCAACGAT
AGCTTTTGCTTTTCTTCTCCTCCCGATGTGCCAGTATTTAACAAGACCCTGCTCACCTCAGAACAAGATTTCCTTTGGTT
GCTGTGGACGTTTCACTGCTGCTGAGTTGCTGTCATTCTCTCTGTCTGTCATGCTCGTCCTCATCTGGGTTCTCACTGGC
CATTGGCTTCTCATGGATGCACTGGCCATGGGCCTCTGTGTCGCCATGATCGCCTTCGTCCGCCTGCCGAGCCTCAAGGT
CTCCTGCCTGCTTCTCTCAGGGCTTCTCATCTATGATGTCTTTTGGGTATTTTTCTCAGCCTACATCTTCAATAGCAATG
TCATGGTGAAGGTGGCCACTCAGCCGGCTGACAATCCCCTTGATGTTCTATCCCGGAAGCTCCACCTGGGGCCCAATGTT
GGGCGTGATGTTCCTCGCCTGTCTCTGCCTGGAAAACTGGTCTTCCCAAGCTCCACTGGCAGCCACTTCTCCATGTTGGG
CATCGGAGACATCGTTATGCCTGGTCTCCTACTATGCTTTGTCCTTCGCTATGACAACTACAAAAAACAAGCCAGTGGGG
ACTCCTGTGGGGCCCCTGGACCTGCCAACATCTCCGGGCGCATGCAGAAGGTCTCCTACTTTCACTGCACCCTCATCGGA
TACTTTGTAGGCCTGCTCACTGCTACTGTGGCGTCTCGCATTCACCGGGCCGCCCAGCCCGCCCTTCTCTATTTGGTGCC
ATTTACTTTATTGCCACTCCTCACGATGGCCTATTTAAAGGGCGACCTCCGGCGGATGTGGTCTGAGCCTTTCCACTCCA
AGTCCAGCAGCTCCCGGTTCCTGGAAGTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 32 .01 RPM |
| SRP007412_cerebellum | 30 .77 RPM |
| SRP007412_heart | 6 .74 RPM |
| SRP007412_kidney | 18 .63 RPM |
| SRP007412_liver | 9 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000016589 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000157837 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000016245 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012754 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020650 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006472 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005548 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001178 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015326 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1578 | 78.24 | 97.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1579 | 78.24 | 88.25 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005041 retrocopies