RetrogeneDB ID: | retro_hsap_1898 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:68892929..68893954(+) | ||
Located in intron of: | ENSG00000265484 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000263733 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPPL3 | ||
Ensembl ID: | ENSG00000157837 | ||
Aliases: | SPPL3, IMP2, MDHV1887, PRO4332, PSH1, PSL4 | ||
Description: | signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:30424] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 89.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | QDKEKDSNSSSGSFNGNSTNNSI-QTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFA |
....KD.NSSSGSFNGNSTNNSI.Q.I.STQALFLPIGASVSLL..F.FFD..QVVFTICTAVL..I.FA | |
Retrocopy | ESTQKDNNSSSGSFNGNSTNNSI<QIIESTQALFLPIGASVSLLLLFCFFD*AQVVFTICTAVLTMITFA |
Parental | FLLLPMCQYLTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFV |
FLLL.MC.YLTR..SPQNKIS.G..G.FTAAELL..SLSV.L.L.WVLTGH.LLMDA.A.GL....I.FV | |
Retrocopy | FLLLLMCEYLTRLYSPQNKISLGSPGCFTAAELLLLSLSVVLILTWVLTGH*LLMDAMAVGLRLTVIFFV |
Parental | RLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVAT-QPADNPLDVLSRKLHLGPNVGRDVPRLSL |
.L...KV.CLLLSGLLIYDVF.V.FSAYIFNS.VMV.VA..Q.A.NPL.VLS.KL.LGP.VGRDVPRLSL | |
Retrocopy | CLLGFKVPCLLLSGLLIYDVF*VVFSAYIFNSSVMVNVAM>QLAENPLYVLSQKLSLGPGVGRDVPRLSL |
Parental | PGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYK-KQASGDSCGAPGPANISGRMQKVSYFHCTL |
PGKLVFP.STGSHF.MLGIGDIVMPG.LLCF.L.YDNYK..QA.GDSCG.PGPANISGRMQKV.YFHCTL | |
Retrocopy | PGKLVFPRSTGSHFLMLGIGDIVMPGHLLCFDLHYDNYK<NQARGDSCGGPGPANISGRMQKVFYFHCTL |
Parental | IGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFHSKSSSSRFLEV |
.GYFV.LLTATVAS.IH.AAQPALL.LVPFTLLPLL.MAYLKGDLR.MWS..FHSK.SSS.FLEV | |
Retrocopy | MGYFVDLLTATVASHIHQAAQPALLCLVPFTLLPLLMMAYLKGDLRWMWSKLFHSKTSSSQFLEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 44 .07 RPM |
bodymap2_adrenal | 0 .00 RPM | 49 .58 RPM |
bodymap2_brain | 0 .00 RPM | 40 .55 RPM |
bodymap2_breast | 0 .00 RPM | 44 .98 RPM |
bodymap2_colon | 0 .00 RPM | 31 .27 RPM |
bodymap2_heart | 0 .00 RPM | 24 .18 RPM |
bodymap2_kidney | 0 .00 RPM | 43 .62 RPM |
bodymap2_liver | 0 .00 RPM | 16 .14 RPM |
bodymap2_lung | 0 .00 RPM | 29 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 45 .21 RPM |
bodymap2_ovary | 0 .00 RPM | 75 .45 RPM |
bodymap2_prostate | 0 .00 RPM | 58 .78 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 22 .92 RPM |
bodymap2_testis | 0 .00 RPM | 82 .41 RPM |
bodymap2_thyroid | 0 .00 RPM | 65 .44 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 59 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1275 |
Gorilla gorilla | retro_ggor_1392 |
Pongo abelii | retro_pabe_1578 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016589 | 1 retrocopy | |
Homo sapiens | ENSG00000138600 | 1 retrocopy | |
Homo sapiens | ENSG00000157837 | 1 retrocopy |
retro_hsap_1898 ,
|
Gorilla gorilla | ENSGGOG00000016245 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012754 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020650 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005041 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005548 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001178 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015326 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |