RetrogeneDB ID: | retro_pabe_1579 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:84649007..84650021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPPL3 | ||
Ensembl ID: | ENSPPYG00000005041 | ||
Aliases: | None | ||
Description: | signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:30424] |
Percent Identity: | 78.24 % |
Parental protein coverage: | 88.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KDSNSSSGSFNGNSTNNSI-QTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLL |
KD.NSS.GSFNG.STNNSI.Q.I.STQALFLPIGASVSLL..F.FFD..QVVFTICTAVL..I.FAFLLL | |
Retrocopy | KDNNSSCGSFNGSSTNNSI<QIIESTQALFLPIGASVSLLLLFCFFD*AQVVFTICTAVLTMITFAFLLL |
Parental | PMCQYLTRPCSPQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPS |
.MCQYLTR.CSPQNKIS.G.CG.FT.AELL..SLSV.L.L.WVLTGH.LLMDALAMGL.V..I.FV.L.. | |
Retrocopy | LMCQYLTRLCSPQNKISLGFCGCFTTAELLLLSLSVVLILTWVLTGH*LLMDALAMGLRVTVIFFVCLLG |
Parental | LKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVAT-QPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKL |
LKV.CLLLSGLLIYDVF.VFFSAYIFNS.VMV.VA..Q.A.NPL.VLS.KL.LGP.VGRDVP.LSLPGKL | |
Retrocopy | LKVPCLLLSGLLIYDVF*VFFSAYIFNSSVMVNVAM>QLAENPLYVLSWKLNLGPSVGRDVPHLSLPGKL |
Parental | VFPSSTGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFHCTLIGYFV |
VFP.STGSHF.MLGIGDIVMP..LLCF.L.YDNYKKQA.GDSCG.PGPANISG.MQKV.YFH....GY.V | |
Retrocopy | VFPRSTGSHFLMLGIGDIVMPSCLLCFDLCYDNYKKQARGDSCGGPGPANISGHMQKVFYFHWPVMGYLV |
Parental | GLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFHSKSSSSRFLEV |
.LLTATVAS.IH.AAQP.LL.LVPFTLLPLL.MAYLKGD...MWS..FHSK.SSS.FLEV | |
Retrocopy | DLLTATVASHIHQAAQPVLLCLVPFTLLPLLMMAYLKGDFWWMWSKLFHSKTSSSQFLEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 32 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .77 RPM |
SRP007412_heart | 0 .00 RPM | 6 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .63 RPM |
SRP007412_liver | 0 .00 RPM | 9 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016589 | 1 retrocopy | |
Homo sapiens | ENSG00000157837 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016245 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012754 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020650 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005041 | 2 retrocopies |
retro_pabe_1578, retro_pabe_1579 ,
|
Pongo abelii | ENSPPYG00000006472 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005548 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001178 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015326 | 1 retrocopy |