RetrogeneDB ID: | retro_mluc_672 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429771:6178405..6179076(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPPL3 | ||
Ensembl ID: | ENSMLUG00000012754 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.28 % |
Parental protein coverage: | 58.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EKTFSRAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFGGNSSNNSIQTIDSTQ |
E.T...AYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQ.KEKDSN....SFGGNSSNNSIQTIDSTQ | |
Retrocopy | EQTYWWAYSLVDSSQVSTFLISILLIVYGSFRSLNMDFENQEKEKDSNIPLVSFGGNSSNNSIQTIDSTQ |
Parental | ALFLPIGASVSLLVMFFFFD-SVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCGRFTA |
ALFLPI..SVSLL.MFFFF..SV.VVFTICT.VLA.IAF.FLLLPMCQYLTRPCSPQNKISF.CCG.FTA | |
Retrocopy | ALFLPIEVSVSLLAMFFFFT<SV*VVFTICTVVLAMIAFVFLLLPMCQYLTRPCSPQNKISFSCCGHFTA |
Parental | AELLSFSLSVML-VLIWVLTGHWLLMDALAMGLCVA-MIAFVRLPSLKVSCLLLSGLLI-YDVFWVFFSA |
AELLSFSLSVML.VLIWVLTG...LMDALAMGL.VA.MIAFVRLPSLKVS.LL.SGLLI...VF.VF.SA | |
Retrocopy | AELLSFSLSVML>VLIWVLTG--FLMDALAMGLSVA>MIAFVRLPSLKVSYLLPSGLLI>MGVFGVFSSA |
Parental | YIFNSNVMVKVATQPADNP |
YIFNSNVMVK..T.PADNP | |
Retrocopy | YIFNSNVMVKAST*PADNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016589 | 1 retrocopy | |
Homo sapiens | ENSG00000157837 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016245 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012754 | 1 retrocopy |
retro_mluc_672 ,
|
Macaca mulatta | ENSMMUG00000020650 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005041 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005548 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001178 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015326 | 1 retrocopy |