Parental gene:

Sppl3-ps1, ENSRNOG00000001178

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:12:49073448..49107696(-)


>ENSRNOG00000001178
GCCTATTCCCTGGTGGATTCCAGTCAAGTGTCGACATTTCTGATATCCATTCTTCTGATAGTCTATGGTAGTTTCAGGTC
TCTTAATATGGACTTTGAGAACCAAGATAAGGAGAAAGACAGCAGCAGTAGTTCTGGCCCTTTCAACGGCAGCAGCACCA
ATAACAGCATTCAGACCATTGACTCCACCCAAGCTCTGTTCCTTCCGATTGGAGCGTCCGTCTCTCTCCTAGTCATGTTC
TTCTTCTTTGACTCAGTTCAAGTCGTTTTCACAATATGTACAGCAGTTCTTGCAACAATAGCTTTTGCTTTTCTTCTTCT
CCCAATGTGCCAGTATTTAACAAGACCCTGCTCACCTCAGAATAAGATTTCCTTCGGTTGCTGTGGGCGTTTCACTGCTG
CCGAGCTGCTGTCCTTCTCCCTGTCAGTCATGCTTGTCCTCATCTGGGTTCTCACTGGACACTGGCTTCTTATGGACGCT
CTGGCCATGGGTCTCTGTGTCGCCATGATCGCCTTCGTCCGCCTGCCAAGCCTCAAGGTTTCCTGCCTGCTTCTCTCAGG
GCTTCTCATCTACGATGTCTTCTGGGTGTTTTTCTCGGCCTACATCTTCAACAGCAATGTCATGGTGAAAGTGGCCACAC
AGCCAGCTGACAATCCCCTCGACGTTCTGTCCCGCAAGCTCCACCTGGGACCCAATGTGGGGCGTGATGTTCCTCGCCTG
TCTTTGCCTGGAAAGTTGGTCTTCCCAAGCTCCACGGGCAGTCACTTCTCTATGTTGGGCATCGGGGACATTGTGATGCC
CGGCCTCCTGTTATGCTTTGTTCTTCGCTACGACAACTACAAGAAACAAGCCAGCGGCGACTCCTGTGGGGCCCCTGGCC
CGGCAAACATCTCTGGGCGCATGCAGAGGGTCTCCTACTTCCACTGCACCCTCATCGGGTACTTTGTAGGTCTGCTCACC
GCAACTGTGGCGTCTCGCATCCACCGGGCCGCCCAGCCAGCCCTCCTCTACTTGGTGCCATTCACCTTATTGCCGCTCCT
CACCATGGCCTACTTAAAGGGTGACTTACGAAGGATGTGGTCTGAGCCATTCCACTCCAAGTCCAGCAGCTCCCGCTTCC
TGGAAGTATGA

Library Parental gene expression (RPM)
SRP017611_liver 11 .63 RPM
SRP017611_kidney 27 .01 RPM
SRP017611_brain 34 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000016589 ortholog_one2one 1 retrogene
retro_dnov_175,
Homo sapiens ENSG00000157837 ortholog_one2one 1 retrogene
retro_hsap_1898,
Gorilla gorilla ENSGGOG00000016245 ortholog_one2one 1 retrogene
retro_ggor_1392,
Myotis lucifugus ENSMLUG00000012754 ortholog_one2one 1 retrogene
retro_mluc_672,
Macaca mulatta ENSMMUG00000020650 ortholog_one2one 1 retrogene
retro_mmul_1359,
Pongo abelii ENSPPYG00000005041 ortholog_one2one 2 retrogenes
retro_pabe_1578, retro_pabe_1579,
Pan troglodytes ENSPTRG00000005548 ortholog_one2one 1 retrogene
retro_ptro_1275,
Rattus norvegicus ENSRNOG00000011652 within_species_paralog 1 retrogene
retro_rnor_1750,
Sarcophilus harrisii ENSSHAG00000015326 ortholog_one2one 1 retrogene
retro_shar_660,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2157 77.27 51.60
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSRNOG00000001178 retrocopies