Parental gene:

ENSPPYG00000012967

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:2b:67402003..67408684(+)


>ENSPPYG00000012967
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTT
GTGACTTATTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGA
AAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATAT
GGTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .29 RPM
SRP007412_cerebellum 35 .51 RPM
SRP007412_heart 19 .42 RPM
SRP007412_kidney 49 .22 RPM
SRP007412_liver 24 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011920 possible_ortholog 4 retrogenes
retro_amel_1407, retro_amel_557, retro_amel_715, retro_amel_765,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Monodelphis domestica ENSMODG00000019803 possible_ortholog 1 retrogene
retro_mdom_1590,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pongo abelii ENSPPYG00000016107 other_paralog 1 retrogene
retro_pabe_821,
Pongo abelii ENSPPYG00000025850 within_species_paralog 4 retrogenes
retro_pabe_1765, retro_pabe_2285, retro_pabe_3492, retro_pabe_3835,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Tarsius syrichta ENSTSYG00000012949 possible_ortholog 2 retrogenes
retro_tsyr_1480, retro_tsyr_2122,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_450 75.34 58.37
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Download FASTA sequences of all ENSPPYG00000012967 retrocopies