RetrogeneDB ID: | retro_ocun_994 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:42399700..42400295(-) | ||
Located in intron of: | ENSOCUG00000020972 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000002743 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.5 % |
Parental protein coverage: | 62.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVK-P |
LR..FEKWGT..DCVV.RD.Q.K.SRGFGF.TYSCV.E.DAAMCA.PHKVD....EPK.AVSR....K.P | |
Retrocopy | LRRRFEKWGTFPDCVVLRDLQMKCSRGFGFMTYSCVQEADAAMCAQPHKVDRYGMEPKTAVSRKELIK>P |
Parental | GAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH |
GAHLTVK.IFV.GIKE..EE.NLRDYF.KY..I.TIEV.E.RQ.G.KR.FAFVTF...DTV.KIV.QKY. | |
Retrocopy | GAHLTVK-IFVAGIKEHSEEHNLRDYF*KYETIKTIEVSENRQTGEKR*FAFVTFNGLDTVNKIVIQKYC |
Parental | TINGHSCEVKKALSKQEMQSAAGSPRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGS |
.I...SCE..K...KQE..SA.GS.RG.GGGSGN.MG.GGN.G.G..NFG.G.N.GGRGS | |
Retrocopy | AISWQSCEMEKIFTKQEIKSAIGSSRGHGGGSGNSMGHGGNSGDGRANFGHGRNLGGRGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 112 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 104 .30 RPM |
SRP017611_liver | 0 .15 RPM | 57 .88 RPM |