Parental gene: | HNRNPA1L2, ENSPPYG00000025850 |
| Aliases: | None |
| Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:54064026..54067635(+) |
>ENSPPYG00000025850
ATGTCTAAGTCGGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACCGA
TGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGATGCAGCTATGAATGCAAGGGGTTATGGAGGAGGCGGC
CCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAG
TGGCAGCTATGACAGCTATAACAACGGAGGCGGAGGCTGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGTGGAA
GCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGC
TCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCAGTTCCAGCAGCAGCAG
TAGCTATGGCAGTGGCAGAAGATTTTAA
ATGTCTAAGTCGGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACCGA
TGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGATGCAGCTATGAATGCAAGGGGTTATGGAGGAGGCGGC
CCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAG
TGGCAGCTATGACAGCTATAACAACGGAGGCGGAGGCTGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGTGGAA
GCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGC
TCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCAGTTCCAGCAGCAGCAG
TAGCTATGGCAGTGGCAGAAGATTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 57 .06 RPM |
| SRP007412_cerebellum | 45 .97 RPM |
| SRP007412_heart | 44 .37 RPM |
| SRP007412_kidney | 78 .09 RPM |
| SRP007412_liver | 46 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000009228 | ortholog_one2one | 7 retrogenes | |
| Loxodonta africana | ENSLAFG00000029587 | possible_ortholog | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004620 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005735 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013350 | possible_ortholog | 1 retrogene | |
| Oreochromis niloticus | ENSONIG00000012248 | ortholog_one2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000001867 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000012967 | within_species_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016107 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1765 | 82.26 | 63.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2285 | 77.87 | 61.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3492 | 66.07 | 56.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3835 | 80.34 | 58.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025850 retrocopies