RetrogeneDB ID: | retro_pabe_3492 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:83821799..83822124(-) | ||
Located in intron of: | ENSPPYG00000019355 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSPPYG00000025850 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 66.07 % |
Parental protein coverage: | 56.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGCFGGGSGSNFGGGGSYNDFGNYNNQSSN-FGPMKGG |
GSRG.G.GG......G....G.G.......G..G...GGS..NFGGGGSYNDFGNY.N..S..FGPMKGG | |
Retrocopy | GSRGGGFGGNDNSGSGGNFSGHGGFGGSGDGYNGFSNGGS--NFGGGGSYNDFGNY-NNQSS>FGPMKGG |
Parental | NFGGRSSGPYGGGGQYFAKPRNQGG-YGSSSSSSSYGSGRRF |
NFGGRSSGPYG.GGQY.AKP.N.GG.YG.SSSSSSYGSGRRF | |
Retrocopy | NFGGRSSGPYGCGGQYYAKP*NHGGYYGGSSSSSSYGSGRRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 57 .06 RPM |
SRP007412_cerebellum | 0 .36 RPM | 45 .97 RPM |
SRP007412_heart | 0 .00 RPM | 44 .37 RPM |
SRP007412_kidney | 0 .10 RPM | 78 .09 RPM |
SRP007412_liver | 0 .03 RPM | 46 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000029587 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001867 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000012967 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016107 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025850 | 4 retrocopies |