RetrogeneDB ID: | retro_amel_1407 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193333.1:2723..3334(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000011920 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.29 % |
Parental protein coverage: | 56.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV |
VSRE.S..PG.H.TVKKI.VGGIKEDTEE...RDYF...GK....E.M.DR.SGKKR.FAF.T..DHD.V | |
Retrocopy | VSREVSQRPGTH*TVKKICVGGIKEDTEEPHVRDYFDQNGKTDVAEIMTDRGSGKKRDFAFITLEDHDSV |
Parental | DKIVVQKYHTINGH-NCEVKKALSKQEMQSAGSQRGRGGGSGNFM-GRGGNFGGGGNFGRGGNFGGRGGY |
D.IV..KY.T.NGH......KALSKQEM.S..S......G.GNF..GRGG.FGG..NFG.GGN.GGRGG. | |
Retrocopy | DEIVIKKYRTVNGH<HLSRVKALSKQEMASTSSSQRGQSGLGNFAGGRGGSFGGNDNFGHGGNIGGRGGF |
Parental | GGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGCGGPGYSSRGGYGASGHQGGRYGGGG |
GG..GG..G.YGG...GYN.FG.DG.N.GGG..Y....GY.................G...G..GGGG | |
Retrocopy | GGSQGG--GGYGGSRDGYNRFGNDGSNFGGGGSYDD-FGYQHSQSANFGPMNRGNSGGRSSGPCGGGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000717 | 3 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000011920 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000004251 | 3 retrocopies | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019803 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014103 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000025948 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000012967 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012676 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001556 | 11 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012949 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014225 | 3 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |