Parental gene: | ENSPPYG00000025906 |
| Aliases: | None |
| Description: | None |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:11651772..11653623(+) |
>ENSPPYG00000025906
ATGAAACTGCTCACCCACAATCTGCTGAGCTCGCATGTGCGGGGGGTGGGGTCCCGTGGCTTCCCCCTGCGCCTCCAGGC
CACCGAGGTCCGTATCTGCCCTGTGGAATTCAACCCCAACTTCGTGGCGCGTATGATACCTAAGGTGGAGTGGTCGGCGT
TCCTGGAGGCGGCCGATAACTTGCGCCTGATCCAGGTGCCTAAAGGGCCGGTTGAGGGATATGAGGAGAATGAGGAGTTT
CTGAGGACCATGCACCACCTGCTGCTGGAGGTGGAAGTGATAGAGGGCACCCTGCAGTGCCCGGAATCTGGACGTATGTT
CCCCATCAGCCGCGGGATCCCCAACATGCTACTGAGTGAAGAGGAAACTGAGAGTTGA
ATGAAACTGCTCACCCACAATCTGCTGAGCTCGCATGTGCGGGGGGTGGGGTCCCGTGGCTTCCCCCTGCGCCTCCAGGC
CACCGAGGTCCGTATCTGCCCTGTGGAATTCAACCCCAACTTCGTGGCGCGTATGATACCTAAGGTGGAGTGGTCGGCGT
TCCTGGAGGCGGCCGATAACTTGCGCCTGATCCAGGTGCCTAAAGGGCCGGTTGAGGGATATGAGGAGAATGAGGAGTTT
CTGAGGACCATGCACCACCTGCTGCTGGAGGTGGAAGTGATAGAGGGCACCCTGCAGTGCCCGGAATCTGGACGTATGTT
CCCCATCAGCCGCGGGATCCCCAACATGCTACTGAGTGAAGAGGAAACTGAGAGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 50 .04 RPM |
| SRP007412_cerebellum | 25 .66 RPM |
| SRP007412_heart | 12 .22 RPM |
| SRP007412_kidney | 66 .29 RPM |
| SRP007412_liver | 39 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017965 | possible_ortholog | 3 retrogenes | |
| Bos taurus | ENSBTAG00000008646 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018026 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000016960 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000173113 | ortholog_one2many | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001334 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000019647 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004991 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017134 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000019857 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1510 | 81.51 | 95.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2357 | 50.55 | 72.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3062 | 97.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3332 | 58.97 | 62.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3496 | 59.50 | 94.40 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025906 retrocopies