RetrogeneDB ID: | retro_nleu_1599 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397300.1:16112945..16113217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRMT112 | ||
Ensembl ID: | ENSNLEG00000004991 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.09 % |
Parental protein coverage: | 64.54 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | DMKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPV-EFNPNFVARMIPKVEWSAFLEAADNLRLIQVPK |
.MKLLTHNLLSSH..GV...GFP..L.ATEV.I.P.....P..VA.M.P...W...L..A..L.L..V.K | |
Retrocopy | NMKLLTHNLLSSHMCGVRPSGFPR*L*ATEVHINPT<NSHPDLVACMVPNMKWAVLLRVANILLLVEVFK |
Parental | GPVEGYEENEEFLRTMHHLLLE |
.P..G.E..E.FLR.MH..L.E | |
Retrocopy | RPI*G*EHEEKFLRKMHNVLQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017965 | 3 retrocopies | |
Bos taurus | ENSBTAG00000008646 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018026 | 1 retrocopy | |
Equus caballus | ENSECAG00000016960 | 1 retrocopy | |
Homo sapiens | ENSG00000173113 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000001334 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000019647 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004991 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025906 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017134 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019857 | 1 retrocopy |