Parental gene: | PTP4A2, ENSPTRG00000000467 |
| Aliases: | None |
| Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:32036530..32047723(-) |
>ENSPTRG00000000467
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCT
CAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACGACTTTGTTTCGAGTTTGTGATGCTACATATGAAAAAGCGC
CAGTTGAAAAAGAAGGCAACCACGTTCTAGATTGGCCATTTGATGATGGAGCTCCACCCCCTAATCAGATAGTAGATGAT
TGGTTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAGGTTGCTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAG
GGCACCTGTGCTGGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTACGAAGATGCAGTTCAGTTTATAAGACAAAAAA
GAAGGGGAGCGTTCAATTCCAAACAGCTGCTTTATTTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AATGGGCATTGCTGTGTTCAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 48 .49 RPM |
| SRP007412_cerebellum | 29 .93 RPM |
| SRP007412_heart | 84 .15 RPM |
| SRP007412_kidney | 45 .84 RPM |
| SRP007412_liver | 32 .21 RPM |
| SRP007412_testis | 82 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017806 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000010834 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002037 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000001424 | ortholog_one2one | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000012930 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018314 | within_species_paralog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_562 | 74.21 | 93.41 | Please wait, loading  |
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| 2. | retro_ptro_654 | 88.69 | 100.00 | Please wait, loading |
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| 3. | retro_ptro_727 | 69.82 | 100.00 | Please wait, loading |
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| 4. | retro_ptro_1212 | 89.04 | 87.43 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000000467 retrocopies