RetrogeneDB ID: | retro_chof_2029 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_460041:27..336(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSCHOG00000010834 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 81.55 % |
Parental protein coverage: | 61.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | WPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKR |
W.FDDGAPPP..IVDDWL.LLKTKF.EEPGCCVA.H.VAGLGRAPVL.ALAL.ECGMKYEDAVQ.IRQKR | |
Retrocopy | WTFDDGAPPPY*IVDDWLHLLKTKFYEEPGCCVAMHYVAGLGRAPVLFALALTECGMKYEDAVQSIRQKR |
Parental | RGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ |
...FNSKQLLYLEKYRPKM.L.FRD..GH..VQ | |
Retrocopy | KETFNSKQLLYLEKYRPKMQLCFRDISGHYYVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017806 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010834 | 1 retrocopy |
retro_chof_2029 ,
|
Macropus eugenii | ENSMEUG00000002037 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001424 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000012930 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000467 | 4 retrocopies |