RetrogeneDB ID: | retro_ptro_654 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:132220532..132221034(-) | ||
Located in intron of: | ENSPTRG00000004492 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSPTRG00000000467 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 88.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLFRVCDATYEKAPVEKEGNHVLDWPFDDG |
MNRPAPVEIS.ENMRFL.THNPT.ATLN.F.EELKKYGV.TL.RVCDATY.KAPVEKEG.H.LDWPFDDG | |
Retrocopy | MNRPAPVEISCENMRFLVTHNPTSATLNEFPEELKKYGVMTLVRVCDATYDKAPVEKEGIHLLDWPFDDG |
Parental | APPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNS |
APPPNQIVDDWLNLL.TKF.EEPG.CVAV.CVAGLGRAPVL.ALALIE.GMKY.DAVQFIRQKRRGAFNS | |
Retrocopy | APPPNQIVDDWLNLL*TKFCEEPGGCVAVPCVAGLGRAPVLIALALIEYGMKYKDAVQFIRQKRRGAFNS |
Parental | KQLLYL-EKYRPKMRLRFRDTNGHCCVQ |
KQLLYL.EKYRPKM.LRFRDTNGHCCVQ | |
Retrocopy | KQLLYL>EKYRPKM*LRFRDTNGHCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .18 RPM | 48 .49 RPM |
SRP007412_cerebellum | 0 .22 RPM | 29 .93 RPM |
SRP007412_heart | 0 .29 RPM | 84 .15 RPM |
SRP007412_kidney | 0 .18 RPM | 45 .84 RPM |
SRP007412_liver | 0 .03 RPM | 32 .21 RPM |
SRP007412_testis | 1 .69 RPM | 82 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_944 |
Gorilla gorilla | retro_ggor_763 |
Pongo abelii | retro_pabe_808 |
Macaca mulatta | retro_mmul_1132 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017806 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010834 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002037 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001424 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000012930 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000467 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018314 | 4 retrocopies |