RetrogeneDB ID: | retro_mmul_1235 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:52662207..52662709(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022646 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSMMUG00000012930 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNRPAPVEISYENMRFLITHNPTNATLNKFT-ELQQIFSRTFMEFGDC---RAPVEKEGIHVLDWPFDDG |
MN.PAPVEISYENM.FLITHNPTNATLNKFT.EL......T.....D.....APVEKEGIHVLDWP.DDG | |
Retrocopy | MNCPAPVEISYENMYFLITHNPTNATLNKFTEELKKYGVMTLVQVCDATYDKAPVEKEGIHVLDWPLDDG |
Parental | APPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGR-APVLVALALIECGMKYEDAVQFIRQKRRGAFN |
APPPNQIVDDWLNLLKTKF.EEPGC.VAVHCVAGLGR.APVLVALALIECGMKYEDAVQFIRQKRRG.F. | |
Retrocopy | APPPNQIVDDWLNLLKTKFHEEPGCSVAVHCVAGLGR>APVLVALALIECGMKYEDAVQFIRQKRRGVFH |
Parental | SKQLLYLEKYRPKMRLRFRDTNGHCCVQ |
SKQLLYLEKYRPKM.L.FR.TNGHCCVQ | |
Retrocopy | SKQLLYLEKYRPKMQLHFRNTNGHCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .24 RPM | 62 .75 RPM |
SRP007412_brain_prefrontal_cortex | 2 .06 RPM | 41 .17 RPM |
SRP007412_cerebellum | 1 .68 RPM | 37 .07 RPM |
SRP007412_heart | 3 .95 RPM | 65 .30 RPM |
SRP007412_kidney | 1 .76 RPM | 62 .32 RPM |
SRP007412_liver | 1 .90 RPM | 26 .56 RPM |
SRP007412_testis | 6 .90 RPM | 102 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017806 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010834 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002037 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001424 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012930 | 1 retrocopy |
retro_mmul_1235 ,
|
Macaca mulatta | ENSMMUG00000019392 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000467 | 4 retrocopies |