Parental gene: | PGAM1, ENSPTRG00000002807 |
| Aliases: | None |
| Description: | Pan troglodytes phosphoglycerate mutase 1 (brain) (PGAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246485] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 10:96908030..96915231(+) |
>ENSPTRG00000002807
ATGGCTGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCCGACCTCAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTCAACGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCA
TGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCTTTCTACA
GCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGATACTATT
GCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCATGG
CAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCCACTGGTA
TTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTTTGGGGGATGAAGAGACGGTGCGC
AAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 300 .77 RPM |
| SRP007412_cerebellum | 131 .31 RPM |
| SRP007412_heart | 48 .94 RPM |
| SRP007412_kidney | 106 .59 RPM |
| SRP007412_liver | 54 .31 RPM |
| SRP007412_testis | 23 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016575 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006844 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000002467 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000028602 | possible_ortholog | 13 retrogenes | |
| Loxodonta africana | ENSLAFG00000015979 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020027 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000004242 | possible_ortholog | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017045 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000050585 | possible_ortholog | 7 retrogenes | |
| Sus scrofa | ENSSSCG00000010517 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000025955 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0014869 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_634 | 78.11 | 78.74 | Please wait, loading  |
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| 2. | retro_ptro_714 | 84.05 | 100.00 | Please wait, loading |
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| 3. | retro_ptro_1082 | 85.13 | 76.38 | Please wait, loading |
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| 4. | retro_ptro_1580 | 73.64 | 92.52 | Please wait, loading |
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| 5. | retro_ptro_1645 | 96.02 | 98.43 | Please wait, loading |
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| 6. | retro_ptro_1755 | 87.38 | 80.31 | Please wait, loading |
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| 7. | retro_ptro_2080 | 56.96 | 61.81 | Please wait, loading |
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| 8. | retro_ptro_2361 | 86.22 | 100.00 | Please wait, loading |
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| 9. | retro_ptro_2889 | 79.50 | 62.99 | Please wait, loading |
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| 10. | retro_ptro_2890 | 80.75 | 62.99 | Please wait, loading |
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| 11. | retro_ptro_3114 | 75.86 | 79.53 | Please wait, loading |
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| 12. | retro_ptro_3238 | 95.67 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000002807 retrocopies