RetrogeneDB ID: | retro_rnor_1669 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:206337326..206338089(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgam1 | ||
Ensembl ID: | ENSRNOG00000050585 | ||
Aliases: | Pgam1, Pgmut | ||
Description: | Phosphoglycerate mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:P25113] |
Percent Identity: | 86.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTV |
MAAYKLVL.R.GESA.NLEN.FS.WY.ADLSPAGHE..K.GGQ.LRDAGYEFDICFTSV.KRAIRTLWTV | |
Retrocopy | MAAYKLVLTRPGESACNLENCFSSWYNADLSPAGHEKEKCGGQVLRDAGYEFDICFTSVRKRAIRTLWTV |
Parental | LDAIDQMWLPVVRTWRLNERHYGG-LTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKD |
LDAI..MWLPVVRTW.LNE..YGG.LTGLNK..TAAKHGEAQVKIWR.SY.VPP.PMEPDH.FY.NISKD | |
Retrocopy | LDAIH*MWLPVVRTWCLNE*RYGG>LTGLNKTKTAAKHGEAQVKIWR*SYNVPPLPMEPDHRFYNNISKD |
Parental | RRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELN |
RRYADLTEDQ.PSCESLKDT.ARALPFWNEEIV.QIKEGK.VLIA.HGNSL.GI.KHLEGLSEEA.MELN | |
Retrocopy | RRYADLTEDQQPSCESLKDTTARALPFWNEEIVLQIKEGKWVLIATHGNSLWGISKHLEGLSEEAFMELN |
Parental | LPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKVKK |
LPTGIPI.YELDKNLKPIKPM.FLGDEETVRKAMEAV.AQGKVKK | |
Retrocopy | LPTGIPITYELDKNLKPIKPMRFLGDEETVRKAMEAVVAQGKVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 415 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 327 .21 RPM |
SRP017611_liver | 0 .00 RPM | 111 .75 RPM |