Parental gene:

PGAM1, ENSCPOG00000006844

Aliases:None
Description:phosphoglycerate mutase 1 (brain) [Source:HGNC Symbol;Acc:8888]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_1:31134237..31141657(+)


>ENSCPOG00000006844
ATGGCCGCCTATAAGCTGGTGCTGATCCGGCACGGCGAGAGCGCCTGGAACCTGGAGAACCGCTTCAGCGGTTGGTACGA
TGCGGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTGCGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAAAGAGCGATCCGAACCCTCTGGACAGTGCTGGATGCCATTGACCAGATGTGGGTGCCG
GTGGTGAGAACCTGGCGTCTCAACGAGCGGCACTATGGGGGTCTGACTGGCCTTAATAAAGCCGAAACTGCTGCCAAGCA
TGGTGAGGCTCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCGCCACCTCCGATGGAACCTGATCATCCCTTCTACA
GCAACATCAGCAAGGATCGTAGGTATGCAGACCTTACTGAAGATCAGCTGCCTTCCTGTGAGAGTCTGAAAGACACCATC
GCCAGAGCTCTGCCTTTCTGGAATGAAGAGATTGTTCCCCAGATCAAGGAGGGGAAGAGAGTGCTGATTGCAGCTCACGG
CAACAGCCTCCGGGGTATAGTCAAGCATCTGGAAGGTCTTTCTGAAGAAGCGATCATGGAGCTGAACCTGCCCACTGGTA
TTCCCATTGTCTACGAATTGGATAAGAACTTAAAGCCCATCAAGCCCATGCAGTTCCTAGGGGATGAAGAGACCGTGCGT
AAAGCAATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 146 .38 RPM
SRP017611_kidney 102 .38 RPM
SRP017611_liver 37 .13 RPM
SRP040447_lung 63 .00 RPM
SRP040447_skeletal_muscle 37 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Erinaceus europaeus ENSEEUG00000005630 possible_ortholog 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2many 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 ortholog_one2one 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 ortholog_one2one 1 retrogene
retro_mputfur_1409,
Mus musculus ENSMUSG00000011752 possible_ortholog 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Pan troglodytes ENSPTRG00000002807 ortholog_one2one 12 retrogenes
retro_ptro_1082, retro_ptro_1580, retro_ptro_1645, retro_ptro_1755, retro_ptro_2080, retro_ptro_2361, retro_ptro_2889, retro_ptro_2890, retro_ptro_3114, retro_ptro_3238, retro_ptro_634, retro_ptro_714,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 possible_ortholog 1 retrogene
retro_shar_323,
Sus scrofa ENSSSCG00000010517 ortholog_one2one 1 retrogene
retro_sscr_373,
Ictidomys tridecemlineatus ENSSTOG00000025955 ortholog_one2one 1 retrogene
retro_itri_1187,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_158 73.48 89.76
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_539 76.00 59.06
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cpor_605 68.95 73.62
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cpor_660 61.94 51.97
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000006844 retrocopies