RetrogeneDB ID: | retro_rnor_703 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:67142376..67143129(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000004002 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgam1 | ||
Ensembl ID: | ENSRNOG00000050585 | ||
Aliases: | Pgam1, Pgmut | ||
Description: | Phosphoglycerate mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:P25113] |
Percent Identity: | 89.84 % |
Parental protein coverage: | 99.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVL |
AAYKLVLIR..E.AWNLE..F..WY...LSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVL | |
Retrocopy | AAYKLVLIRPSEGAWNLEDLFGDWY---LSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVL |
Parental | DAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQV-KIWRRSYDVPPPPMEPDHPFYSNISKDR |
DAIDQMWLPVVRTWR.NERHYG.LTGLNKAETAAKHGEAQV.KIWRRSY.VPP..MEPDHPFYSNISKD. | |
Retrocopy | DAIDQMWLPVVRTWRFNERHYGSLTGLNKAETAAKHGEAQV>KIWRRSYNVPPSSMEPDHPFYSNISKDH |
Parental | RYADLTEDQLPSCESLK-DTIARALPFWNEEIVPQIKEGK-RVLIAAHGNSLRGIVKHLEGLSEEAIMEL |
RYADLTEDQ.PSCESLK.DT.ARALPFWNEE.VPQIKEGK.RVLIAAHGN.L.GIVKHLEGLSEEAIMEL | |
Retrocopy | RYADLTEDQPPSCESLKDDTTARALPFWNEETVPQIKEGK<RVLIAAHGNNLGGIVKHLEGLSEEAIMEL |
Parental | NLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKVKK |
NLPTG.PIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAA.GKVKK | |
Retrocopy | NLPTGNPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAPGKVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .58 RPM | 415 .99 RPM |
SRP017611_kidney | 0 .35 RPM | 327 .21 RPM |
SRP017611_liver | 0 .13 RPM | 111 .75 RPM |