Parental gene:

PGAM1, ENSSSCG00000010517

Aliases:None
Description:phosphoglycerate mutase 1 (brain) [Source:HGNC Symbol;Acc:8888]
Organism:Pig (Sus scrofa)
Coordinates:14:118326881..118336099(+)


>ENSSSCG00000010517
ATGGCTGCCTACAAGCTGGTGCTGATCCGGCACGGTGAGAGCGCGTGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCGGACCTGAGCCCGGCGGGGCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTGCGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCAATTCGGACCCTCTGGACAGTGCTGGATGCCATTGACCAAATGTGGTTGCCA
GTGGTGAGGACCTGGCGCCTTAATGAGCGACACTATGGGGGTCTGACTGGCCTCAATAAGGCAGAAACTGCTGCCAAGCA
TGGCGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCGCCACCTCCGATGGAGCCCGACCATCCCTTCTACA
GCAACATCAGTAAGGATCGCAGATATGCAGACCTCACTGAAGATCAGCTGCCTTCCTGCGAGAGCCTGAAGGACACTATT
GCCAGAGCTCTGCCCTTTTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGGGTACTGATTGCAGCCCATGG
CAACAGCCTTCGGGGCATCGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCGATCATGGAGCTGAACCTGCCGACTGGCA
TTCCCATTGTGTATGAATTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCTGGGCGATGAAGAGACCGTGCGT
AAAGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGCCAAGGGAAGAC

Library Parental gene expression (RPM)
SRP014902_placenta 264 .93 RPM
SRP014902_testis 172 .00 RPM
SRP018288_heart 206 .69 RPM
SRP018288_kidney 234 .15 RPM
SRP018288_liver 107 .46 RPM
SRP018288_lung 217 .09 RPM
SRP018856_adipose 160 .27 RPM
SRP035408_brain 374 .87 RPM
SRP035408_liver 271 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016575 ortholog_one2many 1 retrogene
retro_cjac_370,
Cavia porcellus ENSCPOG00000006844 ortholog_one2one 4 retrogenes
retro_cpor_158, retro_cpor_539, retro_cpor_605, retro_cpor_660,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 ortholog_one2one 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2one 1 retrogene
retro_lafr_886,
Macaca mulatta ENSMMUG00000020027 ortholog_one2many 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 ortholog_one2one 1 retrogene
retro_mputfur_1409,
Pongo abelii ENSPPYG00000002530 ortholog_one2one 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Pan troglodytes ENSPTRG00000002807 ortholog_one2one 12 retrogenes
retro_ptro_1082, retro_ptro_1580, retro_ptro_1645, retro_ptro_1755, retro_ptro_2080, retro_ptro_2361, retro_ptro_2889, retro_ptro_2890, retro_ptro_3114, retro_ptro_3238, retro_ptro_634, retro_ptro_714,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Ictidomys tridecemlineatus ENSSTOG00000025955 ortholog_one2one 1 retrogene
retro_itri_1187,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_373 84.31 98.06
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Download FASTA sequences of all ENSSSCG00000010517 retrocopies