Parental gene: | Snrpf, ENSRNOG00000005556 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein F [Source:RefSeq peptide;Acc:NP_001119563] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 7:34543252..34549956(-) |
>ENSRNOG00000005556
ATGAGTTTACCCCTCAATCCCAAGCCTTTTCTCAATGGACTGACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGCAT
GGAGTACAAGGGCTACCTGGTCTCCGTTGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGGG
CATTGTCTGGACATCTGGGTGAAGTTCTAATAAGGTGTAATAATGTCCTCTACATCAGAGGTGTCGAAGAGGAGGAGGAA
GATGGGGAGATGAGAGAATAG
ATGAGTTTACCCCTCAATCCCAAGCCTTTTCTCAATGGACTGACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGCAT
GGAGTACAAGGGCTACCTGGTCTCCGTTGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGGG
CATTGTCTGGACATCTGGGTGAAGTTCTAATAAGGTGTAATAATGTCCTCTACATCAGAGGTGTCGAAGAGGAGGAGGAA
GATGGGGAGATGAGAGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 3 .43 RPM |
| SRP017611_kidney | 5 .86 RPM |
| SRP017611_brain | 5 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002166 | possible_ortholog | 3 retrogenes | |
| Bos taurus | ENSBTAG00000016271 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019817 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000029966 | possible_ortholog | 4 retrogenes | |
| Homo sapiens | ENSG00000139343 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001127 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009302 | ortholog_one2one | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007176 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000020018 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005835 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000004847 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009036 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000895 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_444 | 94.25 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1822 | 91.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_1849 | 87.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2926 | 86.21 | 97.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000005556 retrocopies