Parental gene:

SNRPF, ENSG00000139343

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]
Organism:Human (Homo sapiens)
Coordinates:12:96252705..96297606(+)


>ENSG00000139343
ATGAGTTTACCCCTCAATCCCAAACCTTTCCTCAATGGACTAACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGAAT
GGAGTACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGAG
CTTTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGTGTGGAAGAAGAGGAAGAA
GATGGGGAAATGAGAGAATAG

Library Parental gene expression (RPM)
bodymap2_adipose 23 .75 RPM
bodymap2_adrenal 43 .40 RPM
bodymap2_brain 19 .08 RPM
bodymap2_breast 19 .40 RPM
bodymap2_colon 25 .97 RPM
bodymap2_heart 9 .60 RPM
bodymap2_kidney 20 .25 RPM
bodymap2_liver 24 .52 RPM
bodymap2_lung 19 .87 RPM
bodymap2_lymph_node 24 .76 RPM
bodymap2_ovary 37 .28 RPM
bodymap2_prostate 21 .08 RPM
bodymap2_skeletal_muscle 6 .20 RPM
bodymap2_testis 33 .63 RPM
bodymap2_thyroid 30 .73 RPM
bodymap2_white_blood_cells 24 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Bos taurus ENSBTAG00000016271 ortholog_one2one 1 retrogene
retro_btau_765,
Equus caballus ENSECAG00000019817 ortholog_one2one 1 retrogene
retro_ecab_154,
Felis catus ENSFCAG00000029966 possible_ortholog 4 retrogenes
retro_fcat_280, retro_fcat_66, retro_fcat_77, retro_fcat_861,
Homo sapiens ENSG00000164167 within_species_paralog 2 retrogenes
retro_hsap_1948, retro_hsap_2107,
Gorilla gorilla ENSGGOG00000001127 ortholog_one2one 2 retrogenes
retro_ggor_1549, retro_ggor_225,
Macaca mulatta ENSMMUG00000009302 ortholog_one2one 4 retrogenes
retro_mmul_1521, retro_mmul_361, retro_mmul_550, retro_mmul_893,
Mustela putorius furo ENSMPUG00000007176 ortholog_one2one 3 retrogenes
retro_mputfur_1309, retro_mputfur_377, retro_mputfur_941,
Mus musculus ENSMUSG00000020018 ortholog_one2one 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Nomascus leucogenys ENSNLEG00000005835 ortholog_one2one 3 retrogenes
retro_nleu_2259, retro_nleu_274, retro_nleu_651,
Pongo abelii ENSPPYG00000004847 ortholog_one2one 2 retrogenes
retro_pabe_381, retro_pabe_489,
Pteropus vampyrus ENSPVAG00000009036 ortholog_one2one 1 retrogene
retro_pvam_1170,
Rattus norvegicus ENSRNOG00000005556 ortholog_one2one 4 retrogenes
retro_rnor_1822, retro_rnor_1849, retro_rnor_2926, retro_rnor_444,
Sus scrofa ENSSSCG00000000895 ortholog_one2one 1 retrogene
retro_sscr_958,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_125 73.33 100.00
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2. retro_hsap_2487 90.48 97.67
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3. retro_hsap_2645 66.67 98.84
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Download FASTA sequences of all ENSG00000139343 retrocopies