Parental gene:

ENSFCAG00000029966

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:B4:119271776..119277939(+)


>ENSFCAG00000029966
AGCTACTCCAGTCACGAGGGACGGACGACAGCTGGGTCGGCGGCGAGTGGCCTGCAGCATTTGCTTATAGTCGCGATGAG
TTTGCCCCTCAATCCCAAACCTTTCCTGAATGGATTAACAGGAAAGCCAGTAATGGTGAAACTTAAGTGGGGAATGGAGT
ACAAAGGCTACCTGGTATCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGATGGAGCATTG
TCTGGACATTTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGGGGTGTTGAAGAAGAGGAAGAAGATGG
GGAAATGAGAGAATAG

Library Parental gene expression (RPM)
SRP017611_liver 3 .64 RPM
SRP017611_kidney 8 .04 RPM
SRP017611_brain 7 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Bos taurus ENSBTAG00000016271 possible_ortholog 1 retrogene
retro_btau_765,
Canis familiaris ENSCAFG00000006395 ortholog_one2one 6 retrogenes
retro_cfam_110, retro_cfam_1975, retro_cfam_372, retro_cfam_619, retro_cfam_742, retro_cfam_763,
Callithrix jacchus ENSCJAG00000002705 ortholog_one2one 2 retrogenes
retro_cjac_1705, retro_cjac_3039,
Equus caballus ENSECAG00000019817 possible_ortholog 1 retrogene
retro_ecab_154,
Erinaceus europaeus ENSEEUG00000013509 possible_ortholog 4 retrogenes
retro_eeur_241, retro_eeur_465, retro_eeur_467, retro_eeur_636,
Echinops telfairi ENSETEG00000001558 ortholog_one2one 3 retrogenes
retro_etel_1765, retro_etel_1846, retro_etel_560,
Homo sapiens ENSG00000139343 possible_ortholog 3 retrogenes
retro_hsap_125, retro_hsap_2487, retro_hsap_2645,
Gorilla gorilla ENSGGOG00000001127 possible_ortholog 2 retrogenes
retro_ggor_1549, retro_ggor_225,
Latimeria chalumnae ENSLACG00000002456 possible_ortholog 1 retrogene
retro_lcha_73,
Loxodonta africana ENSLAFG00000017426 possible_ortholog 1 retrogene
retro_lafr_241,
Macaca mulatta ENSMMUG00000009302 possible_ortholog 4 retrogenes
retro_mmul_1521, retro_mmul_361, retro_mmul_550, retro_mmul_893,
Monodelphis domestica ENSMODG00000008091 possible_ortholog 3 retrogenes
retro_mdom_550, retro_mdom_780, retro_mdom_811,
Mustela putorius furo ENSMPUG00000007176 possible_ortholog 3 retrogenes
retro_mputfur_1309, retro_mputfur_377, retro_mputfur_941,
Mus musculus ENSMUSG00000020018 possible_ortholog 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Nomascus leucogenys ENSNLEG00000005835 possible_ortholog 3 retrogenes
retro_nleu_2259, retro_nleu_274, retro_nleu_651,
Pongo abelii ENSPPYG00000004847 possible_ortholog 2 retrogenes
retro_pabe_381, retro_pabe_489,
Pelodiscus sinensis ENSPSIG00000016462 possible_ortholog 2 retrogenes
retro_psin_31, retro_psin_54,
Pteropus vampyrus ENSPVAG00000009036 possible_ortholog 1 retrogene
retro_pvam_1170,
Rattus norvegicus ENSRNOG00000005556 possible_ortholog 4 retrogenes
retro_rnor_1822, retro_rnor_1849, retro_rnor_2926, retro_rnor_444,
Sarcophilus harrisii ENSSHAG00000012294 possible_ortholog 1 retrogene
retro_shar_468,
Sus scrofa ENSSSCG00000000895 possible_ortholog 1 retrogene
retro_sscr_958,
Tarsius syrichta ENSTSYG00000006837 possible_ortholog 4 retrogenes
retro_tsyr_1239, retro_tsyr_1782, retro_tsyr_192, retro_tsyr_2115,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_66 76.84 85.59
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2. retro_fcat_77 79.07 77.48
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3. retro_fcat_280 74.56 100.00
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4. retro_fcat_861 85.59 100.00
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Download FASTA sequences of all ENSFCAG00000029966 retrocopies