Parental gene:

Cfdp1, ENSRNOG00000019326

Aliases:None
Description:Craniofacial development protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q75UQ2]
Organism:Rat (Rattus norvegicus)
Coordinates:19:54794745..54885270(-)


>ENSRNOG00000019326
ATGGAAGAATTCGACTCTGAAGATTTCTCCACATCGGACGAGGATGAGGACTACGTGCCATCGGGTGGCGAGTACAGTGA
AGATGATGTCAATGAATTAGTGAAGGAGGATGAAGTGGATGGTGAAGAGCAGGCTGAGAAAACCAAAGGGAAAAGAAGGA
AGGCTCAGAGCATTCCAGCCAGGAAGAGAAAACAAAGTGGCCTCTTATTAGACGAAGAGGAAGACGGCGAGGAAGACTCT
GGAGGCAGCAGTAGGGAAGAAGATGAAGAGGAGCAAGAAGGAGGCCTTGGGTCAGAGACTTCGAGGAAGAAGAAGGAAGA
TGAATTGTGGGCCAGCTTCCTTAATGATGTAGGAACAAAGTCAAAAGCAGCCTCAAGTTCACAAGTTAAGGTAGCAGAGG
AGACTGAAGAGACTAGTTCAAGTAAACCATTGGTGAAAGCAGATGAACTAGAGAAACCTAAAGAATCAGAAAAGGTGAAG
ATTACCAAGGTGTTTGACTTTGCTGGCGAAGAAGTAAGGGTGACTAAGGAAGTAGATGCTACATCTAAGGAAGCCAAGTC
TTTCCTCAAGCAAACAGAGAAAGAAAAACCACAGGCTCTTGTCACTTCAGCGGCAACACCACCCCCTGCTGGGTCAGGGA
TAAAAAGAACAAGTGGGATGAGCAGCCTTTTAGGGAAAATTGGAGCCAAGAAACAGAAAATGAGCACCCTTGAGAAATCC
AAATTGGACTGGGAGAGCTTCAAGGAGGAAGAAGGGATTGGTGAAGAGCTGGCCATCCATAACCGAGGGAAAGAGGGGTA
CATCGAACGGAAAGCTTTTCTGGAGCGCGTGGACCACAGGCAGTTTGAAATTGAGCGAGATCTCAGGCTGAGCAAAATGA
AACCTTGA

Library Parental gene expression (RPM)
SRP017611_liver 20 .98 RPM
SRP017611_kidney 41 .94 RPM
SRP017611_brain 70 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000695 ortholog_one2one 1 retrogene
retro_cpor_465,
Dasypus novemcinctus ENSDNOG00000013266 ortholog_one2one 2 retrogenes
retro_dnov_2442, retro_dnov_2546,
Echinops telfairi ENSETEG00000016429 ortholog_one2one 1 retrogene
retro_etel_1574,
Myotis lucifugus ENSMLUG00000000890 ortholog_one2many 1 retrogene
retro_mluc_2525,
Ictidomys tridecemlineatus ENSSTOG00000004124 ortholog_one2many 2 retrogenes
retro_itri_1117, retro_itri_1815,
Tupaia belangeri ENSTBEG00000015362 ortholog_one2one 2 retrogenes
retro_tbel_1305, retro_tbel_2189,
Tursiops truncatus ENSTTRG00000001215 ortholog_one2one 1 retrogene
retro_ttru_1385,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2289 90.51 100.00
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Download FASTA sequences of all ENSRNOG00000019326 retrocopies