RetrogeneDB ID: | retro_rnor_2289 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:52490099..52490984(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046279 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cfdp1 | ||
Ensembl ID: | ENSRNOG00000019326 | ||
Aliases: | None | ||
Description: | Craniofacial development protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q75UQ2] |
Percent Identity: | 90.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEEFDSEDFSTSDEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQAEKTKGKRRKAQSIPARKRKQSGLLL |
M.E.DSEDFSTSDEDEDYV.SGGEYSEDDVNE.VKEDEVDGEE.AEKTKGKRRKAQSIPARKRKQSGL.L | |
Retrocopy | MGELDSEDFSTSDEDEDYVSSGGEYSEDDVNESVKEDEVDGEERAEKTKGKRRKAQSIPARKRKQSGLSL |
Parental | DEEEDGEEDSGGSSREEDEEEQEGGLGSETSRKKKEDELWASFLNDVGTKSKAASSSQVKVAEETEETSS |
DEE.DG.EDSGG.S.EEDEEEQEGGLGSE..RKKK.DELWAS.LNDVG.KSKAA.SSQVKVA.ETE.TSS | |
Retrocopy | DEEDDGREDSGGGSSEEDEEEQEGGLGSENARKKKDDELWASLLNDVGPKSKAAPSSQVKVAAETEGTSS |
Parental | SKPLVKADELEKPKESEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFLKQTEKEKPQALVTSAATPPPA |
S.PLVKA.ELEKPKESEKV.IT.VFDFAG.EVRVTKEVDATSKEAKS.LKQTEKEKPQALVTSA.TP.PA | |
Retrocopy | SEPLVKAGELEKPKESEKVTITTVFDFAGKEVRVTKEVDATSKEAKSLLKQTEKEKPQALVTSAETPLPA |
Parental | GSGIKRTSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLERVDHR |
GSGIKRTSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLER.DHR | |
Retrocopy | GSGIKRTSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLERMDHR |
Parental | QFEIERDLRLSKMKP |
QFEIERDLRLS.MKP | |
Retrocopy | QFEIERDLRLSQMKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 70 .31 RPM |
SRP017611_kidney | 0 .21 RPM | 41 .94 RPM |
SRP017611_liver | 0 .00 RPM | 20 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000695 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013266 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016429 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000890 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019326 | 1 retrocopy |
retro_rnor_2289 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000004124 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015362 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001215 | 1 retrocopy |