RetrogeneDB ID: | retro_mluc_2525 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430711:74596..75111(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000000890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.89 % |
Parental protein coverage: | 80.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EQTQKTKGKKR-KAQSIPARKRKQGGLSLEEEEEEDVSGESGGSSNEEEDTAAEQEGGTRSEDARKKKED |
.QTQKTK.....KAQSIPARKR.QGGLSLEEEEEE.VSGESGGSSNEEEDTAAEQEG.TRSEDAR..KED | |
Retrocopy | QQTQKTKXXXX>KAQSIPARKRRQGGLSLEEEEEEHVSGESGGSSNEEEDTAAEQEG-TRSEDAR-EKED |
Parental | ELWASFLNDVGPKSKVPSSPQV-KKREETEETSSNKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK |
.LWASFLNDV.PKSKVP.S.QV....EETEET.SN.LLVKAEELEKPK..EKVKI..VFDF.GEEVRVT. | |
Retrocopy | GLWASFLNDVAPKSKVPLSLQV>XXXEETEETTSNELLVKAEELEKPK--EKVKIIQVFDFTGEEVRVTE |
Parental | EVD-ATSKEAKSFLKQNEKEKPQTNIPSTLAS-LPAGSG |
EVD..TSK.AKSF..QNEKEKPQTN.PS.LAS..PAGSG | |
Retrocopy | EVD>ITSK*AKSFFEQNEKEKPQTNVPSILAS<IPAGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000695 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013266 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016429 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000890 | 1 retrocopy |
retro_mluc_2525 ,
|
Rattus norvegicus | ENSRNOG00000019326 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004124 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015362 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001215 | 1 retrocopy |