RetrogeneDB ID: | retro_itri_1117 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393379.1:4595106..4595394(+) | ||
Located in intron of: | ENSSTOG00000016169 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000004124 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.27 % |
Parental protein coverage: | 51.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EEQEKGTGSEDARKKKEDELWASFLNDVGPKSKLPSSTQ-VKTGEETEEMSSSKLLVKAEELEKPKETEK |
....K.TGS..ARKK.EDELWA.FLND..PK..LP..TQ.VKT.EETEEM.S.KLLVKAEELEKPKE..K | |
Retrocopy | QRNQKCTGSAYARKK-EDELWARFLNDTRPKLELPC-TQ<VKTAEETEEMGSGKLLVKAEELEKPKELKK |
Parental | VKITKVFDFAGEEVR-VTKEVDA-TSKEAKSFFK |
.KIT.VFD.A..EVR..TK.VD...SKEAKSF.K | |
Retrocopy | LKITHVFDLA--EVR<MTKKVDT<SSKEAKSFPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000000695 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013266 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016429 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000890 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019326 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004124 | 2 retrocopies |
retro_itri_1117 , retro_itri_1815,
|
Tupaia belangeri | ENSTBEG00000015362 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001215 | 1 retrocopy |