Parental gene:

HNRNPA1, ENSSSCG00000000288

Aliases:HNRNPA1, HNRPA1, ROA1
Description:Sus scrofa heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077218]
Organism:Pig (Sus scrofa)
Coordinates:5:20329596..20333769(+)


>ENSSSCG00000000288
ATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGA
TGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCT
CCAGAGGTTTCGGGTTTGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATGCAAGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGA
TTGAAATCATGACGGACAGGGGCAGTGGCAAAAAGAGAGGTTTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGAC
AAGATTGTCATTCAGAAATACCACACTGTGAATGGCCACAACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGAAATG
ACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTGGCAGTCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGACGGAAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAA
CAATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTT
TAA

Library Parental gene expression (RPM)
SRP014902_placenta 131 .14 RPM
SRP014902_testis 558 .29 RPM
SRP018288_heart 232 .78 RPM
SRP018288_kidney 264 .09 RPM
SRP018288_liver 139 .60 RPM
SRP018288_lung 394 .98 RPM
SRP018856_adipose 544 .18 RPM
SRP035408_brain 569 .43 RPM
SRP035408_liver 287 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000020972 possible_ortholog 1 retrogene
retro_cpor_1078,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Sus scrofa ENSSSCG00000015988 within_species_paralog 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_354 84.32 57.50
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2. retro_sscr_355 84.32 57.50
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3. retro_sscr_861 76.68 59.38
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Download FASTA sequences of all ENSSSCG00000000288 retrocopies