Parental gene:

HNRNPA3, ENSSSCG00000015988

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Pig (Sus scrofa)
Coordinates:15:92417763..92428752(+)


>ENSSSCG00000015988
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAATTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTTACAGATTGTGTGGTGATGAGAGACCCCCAAACGAAACGTTCCAGGGGATTTGGTTTT
GTGACTTACTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGACGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGACACAGAGGAATACAATTTGAGAGACTACTTTGAAAAGTATGGCAAAATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTCGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATAAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAAATGCAATCTGCTGGATCACAGA
GAGGTCGTGGAGGGGGATCTGGCAACTTTATGGGTCGTGGCGGAAACTTTGGAGGTGGTGGAGGCAACTTTGGCCGTGGC
GGAAACTTTGGTGGAAGAGGAGGTTATGGTGGTGGAGGTGGTGGCAGCAGGGGTAGTTATGGAGGAGGCGATGGTGGATA
TAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTATAGTAGTAGAGGAGGCTATGGTGGTGGTGGAC
CAGGATATGGGAACCAAGGTGGTGGATATGGTGGCGGTGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGA
GGTGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAACAATCAAATTATGGACCCAT
GAAGGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGAT
ATGGTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 49 .38 RPM
SRP014902_testis 138 .19 RPM
SRP018288_heart 153 .18 RPM
SRP018288_kidney 270 .20 RPM
SRP018288_liver 179 .58 RPM
SRP018288_lung 310 .16 RPM
SRP018856_adipose 442 .64 RPM
SRP035408_brain 370 .14 RPM
SRP035408_liver 285 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013497 ortholog_one2one 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Mus musculus ENSMUSG00000059005 possible_ortholog 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000028132 ortholog_one2one 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Pteropus vampyrus ENSPVAG00000010380 ortholog_one2one 2 retrogenes
retro_pvam_1077, retro_pvam_326,
Sus scrofa ENSSSCG00000000288 within_species_paralog 3 retrogenes
retro_sscr_354, retro_sscr_355, retro_sscr_861,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_391 81.10 66.23
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2. retro_sscr_621 79.37 64.64
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3. retro_sscr_764 92.56 81.27
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4. retro_sscr_927 91.39 55.15
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5. retro_sscr_1110 64.08 63.85
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6. retro_sscr_1152 88.58 75.46
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Download FASTA sequences of all ENSSSCG00000015988 retrocopies