RetrogeneDB ID: | retro_sscr_621 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:57842708..57843438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSSSCG00000015988 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 64.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MEVKPPPGRPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVV |
.EVKPPPG.PQ.DS.......R...G.EGHDPKEP.QLRKLFIGGL.FETTDDSLREHFEKWGTLTDCVV | |
Retrocopy | VEVKPPPGHPQLDSSHCRHCSRAGGG*EGHDPKEPKQLRKLFIGGLNFETTDDSLREHFEKWGTLTDCVV |
Parental | MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKI-FVGGIKE |
MRDPQTK.SRGFGFVTYS.VEEVDA.MCA.PHKVDG.VVEPKRAVSREDSVKPGAHLTVKKI.FVGGIK. | |
Retrocopy | MRDPQTKCSRGFGFVTYSYVEEVDAVMCAGPHKVDGQVVEPKRAVSREDSVKPGAHLTVKKI<FVGGIK- |
Parental | DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKY-HTINGHN-CEVKKALS |
DTEEYNLRDYFEK.GKIETIEVMEDRQS.KKRGFAFVT.DDHDTV.K..VQKY.HTINGHN.CEVK..LS | |
Retrocopy | DTEEYNLRDYFEK*GKIETIEVMEDRQSRKKRGFAFVTCDDHDTVFK-TVQKY>HTINGHN>CEVKNHLS |
Parental | KQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGG |
KQEMQ...SQR..G.GSGN.MG.G.....G.GNF..G.N..G | |
Retrocopy | KQEMQFTRSQRAHGEGSGNLMGHG----DGKGNFVCGRNYCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 49 .38 RPM |
SRP014902_testis | 0 .00 RPM | 138 .19 RPM |
SRP018288_heart | 0 .03 RPM | 153 .18 RPM |
SRP018288_kidney | 0 .00 RPM | 270 .20 RPM |
SRP018288_liver | 0 .00 RPM | 179 .58 RPM |
SRP018288_lung | 0 .00 RPM | 310 .16 RPM |
SRP018856_adipose | 0 .02 RPM | 442 .64 RPM |
SRP035408_brain | 0 .03 RPM | 370 .14 RPM |
SRP035408_liver | 0 .00 RPM | 285 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013497 | 12 retrocopies | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013622 | 6 retrocopies | |
Mus musculus | ENSMUSG00000059005 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028132 | 7 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010380 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000000288 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000015988 | 6 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |