RetrogeneDB ID: | retro_cpor_1078 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_44:9141297..9141750(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSCPOG00000020972 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.52 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT-FDDHDSVDKIVIQKYHT |
.LTVK..F.GGIKEDTEE.H..DYFEQYGK....EI.TD.G.GKKRGFAF.T..DDHDSV..IVIQKYHT | |
Retrocopy | YLTVKNTFIGGIKEDTEEYHQ*DYFEQYGKTKMVEIITDQGKGKKRGFAFIT<LDDHDSVNRIVIQKYHT |
Parental | VNG-HNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGG-NDSFGRGGNFSGRGG-FGGSRGGGG |
VN..HNCE..KALS.QEMASASS.Q.G.SG.GNFGGG..GG....ND..GRG.NF.G......GS.GGGG | |
Retrocopy | VNA<HNCEMKKALS*QEMASASSNQTGQSGPGNFGGGCAGGLVA<NDNLGRGRNFNGQEA>WCGSSGGGG |
Parental | YGGSG-DGYNGFGNDGS |
YG.SG.DGY..FGN..S | |
Retrocopy | YGDSG<DGYHRFGNNAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 98 .62 RPM |
SRP017611_liver | 0 .00 RPM | 45 .05 RPM |
SRP040447_lung | 0 .00 RPM | 143 .33 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 58 .62 RPM |