Parental gene: | PTEN, ENSSSCG00000010440 |
| Aliases: | None |
| Description: | phosphatase and tensin homolog [Source:HGNC Symbol;Acc:9588] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 14:108911518..109003081(+) |
>ENSSSCG00000010440
ATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTA
TATTTATCCAAACATTATTGCTATGGGGTTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAG
TAAGGTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCTATGTGCTGAAAGACATTATGATACCGCCAAA
TTTAACTGCAGAGTTGCACAGTATCCTTTCGAAGACCATAATCCACCACAGCTAGAACTTATCAAACCTTTTTGTGAAGA
TCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAA
TGATTTGTGCATATTTGTTACATCGGGGTAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTAAGGACC
AGAGACAAAAAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTATAGCTACCTGTTAAAGAATCATCTGGA
TTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAATCCTC
AGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTAC
TTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGACATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTAAAAAA
GGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAA
GTCTGTGTGATCAAGAAATTGATAGTATTTGCAGTATAGAACGTGCAGATAATGACAAGGAATATCTAGTACTCACTTTA
ACAAAAAATGATCTCGACAAAGCAAATAAAGACAAGGCCAACCGATACTTTTCTCCAAATTTTAAGGTGAAGCTGTACTT
CACAAAAACAGTAGAGGAGCCATCAAATCCAGAGGCTAGCAGTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAAC
CTGATCATTATAGATATTCTGACACCACTGACTCTGATCCAGAAAATGAACCTTTTGATGAAGATCAGCATACACAAATT
ACAAAAGTCTGA
ATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTA
TATTTATCCAAACATTATTGCTATGGGGTTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAG
TAAGGTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCTATGTGCTGAAAGACATTATGATACCGCCAAA
TTTAACTGCAGAGTTGCACAGTATCCTTTCGAAGACCATAATCCACCACAGCTAGAACTTATCAAACCTTTTTGTGAAGA
TCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAA
TGATTTGTGCATATTTGTTACATCGGGGTAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTAAGGACC
AGAGACAAAAAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTATAGCTACCTGTTAAAGAATCATCTGGA
TTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAATCCTC
AGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTAC
TTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGACATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTAAAAAA
GGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAA
GTCTGTGTGATCAAGAAATTGATAGTATTTGCAGTATAGAACGTGCAGATAATGACAAGGAATATCTAGTACTCACTTTA
ACAAAAAATGATCTCGACAAAGCAAATAAAGACAAGGCCAACCGATACTTTTCTCCAAATTTTAAGGTGAAGCTGTACTT
CACAAAAACAGTAGAGGAGCCATCAAATCCAGAGGCTAGCAGTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAAC
CTGATCATTATAGATATTCTGACACCACTGACTCTGATCCAGAAAATGAACCTTTTGATGAAGATCAGCATACACAAATT
ACAAAAGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 13 .01 RPM |
| SRP014902_testis | 24 .75 RPM |
| SRP018856_adipose | 29 .42 RPM |
| SRP018288_kidney | 31 .13 RPM |
| SRP018288_lung | 112 .01 RPM |
| SRP018288_liver | 36 .30 RPM |
| SRP018288_heart | 60 .64 RPM |
| SRP035408_liver | 15 .97 RPM |
| SRP035408_brain | 6 .99 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000009252 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000171862 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000000893 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012141 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002448 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000003709 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_236 | 90.00 | 54.34 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_237 | 90.00 | 54.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000010440 retrocopies